View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14421_high_4 (Length: 693)

Name: NF14421_high_4
Description: NF14421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14421_high_4
NF14421_high_4
[»] chr3 (5 HSPs)
chr3 (446-677)||(30477683-30477914)
chr3 (19-314)||(30477383-30477679)
chr3 (320-440)||(30480408-30480527)
chr3 (429-514)||(24094461-24094547)
chr3 (479-513)||(30480673-30480707)
[»] chr2 (2 HSPs)
chr2 (415-510)||(27967499-27967595)
chr2 (415-490)||(28105146-28105221)
[»] chr4 (2 HSPs)
chr4 (546-633)||(1639264-1639351)
chr4 (262-307)||(1639186-1639231)
[»] chr7 (2 HSPs)
chr7 (415-538)||(38307517-38307649)
chr7 (415-510)||(5180924-5181018)
[»] chr1 (1 HSPs)
chr1 (323-404)||(11233570-11233649)
[»] chr5 (1 HSPs)
chr5 (316-388)||(29053692-29053764)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 446 - 677
Target Start/End: Original strand, 30477683 - 30477914
Alignment:
Q  446 acttaaatacaaccattagagataaaatagtaaactaacataaaataaaatactatttaaaataagctaccactctagtaatttcttgttacaataccgg 545  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30477683 acttaaatacaaccattagagataaaatagtaaactaacataaaataaaatactatttaaaataagctaccactctagtaatttcttgttacaataccgg 30477782  T
Q  546 tccccttcaaacatcatgttcctcgaggatgaaaattccaaaataccatgcttaagaggtaaagtctttaatttaagtagaattgttgaattatgattac 645  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30477783 tccccttcaaacatcatgttcctcgaggatgaaaattccaaaataccatgcttaagaggtaaagtctttaatttaagtagaattgttgaattatgattac 30477882  T
Q  646 atccccagtcaatcattttcaaatatagaata 677  Q
    ||||||||||||||||||||||||||||||||    
T  30477883 atccccagtcaatcattttcaaatatagaata 30477914  T

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Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 30477383 - 30477679
Alignment:
Q  19 ctccttacatactctgtatgaatttgatttcatacattatagtctttctttttccgttttgctttcttttctatctcctttagcttgtataacnnnnnnn 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||           
T  30477383 ctccttacatactctgtatgaatttgatttcatacattatagtctttctttttccgttttgctttcttttctatatcctttagcttgtataacaaaacaa 30477482  T
Q  119 n--cgaaatttaaatagttaaactaaatattttaacaagtacaaaaagcagatggaaagagttaaacttatgaaaaagctaacaaatagccatgaagcta 216  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30477483 aaacgaaatttaaatagttaaactaaatattttaacaagtacaaaaagcagatggaaagagttaaacttatgaaaaagctaacaaatagccatgaagcta 30477582  T
Q  217 agaaaataaatatggtaaaatgtcttggaacnnnnnnnnagaggatgtaacagataaatggattttagagacgaactgataaaattcgtacttaaatt 314  Q
    |||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30477583 agaaaataaatatggtaaaatgtcttggaac-tttttttagaggatgtaacagataaatggattttagagacgaactgataaaattcgtactcaaatt 30477679  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 320 - 440
Target Start/End: Original strand, 30480408 - 30480527
Alignment:
Q  320 aattcaatgattgaatgagatcctatgatgaagaatgaaatgaaaaatattagagagagttttcatagagaagaagataagtttttgaaaaaatattgat 419  Q
    |||||||||||||||||| ||||  |||| |||| |||| ||| || ||||||||||| |||||||| | ||||||| ||||||||||  ||||||||||    
T  30480408 aattcaatgattgaatgaaatccagtgataaagagtgaattgagaagtattagagaga-ttttcataaaaaagaagaaaagtttttgatgaaatattgat 30480506  T
Q  420 tgattgcaaatgagccacaaa 440  Q
    ||||| |||||||||||||||    
T  30480507 tgattacaaatgagccacaaa 30480527  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 429 - 514
Target Start/End: Original strand, 24094461 - 24094547
Alignment:
Q  429 atgagccacaaatacaaacttaaatacaaccattagagataaaatagtaaactaacataaaataaaa-tactatttaaaataagcta 514  Q
    ||||||||||||  ||| |||||||||||| ||||||| ||||||| |||||| |  |||||||||| ||||| |||||||||||||    
T  24094461 atgagccacaaaagcaagcttaaatacaacaattagaggtaaaataataaactgatgtaaaataaaactactaattaaaataagcta 24094547  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 479 - 513
Target Start/End: Original strand, 30480673 - 30480707
Alignment:
Q  479 actaacataaaataaaatactatttaaaataagct 513  Q
    |||||||||||||||||||||||||||||||||||    
T  30480673 actaacataaaataaaatactatttaaaataagct 30480707  T

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Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 415 - 510
Target Start/End: Complemental strand, 27967595 - 27967499
Alignment:
Q  415 ttgattgattgcaaatgagccacaaatacaaacttaaatacaaccattagagataaaatagtaaactaacataaaataaaa-tactatttaaaataa 510  Q
    |||||||||| || ||||||||||||  ||| ||||| |||||||||||| | |||||||||||||  ||||||||||||| || ||||||||||||    
T  27967595 ttgattgatttcatatgagccacaaaggcaagcttaagtacaaccattaggggtaaaatagtaaaccgacataaaataaaactaatatttaaaataa 27967499  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 415 - 490
Target Start/End: Original strand, 28105146 - 28105221
Alignment:
Q  415 ttgattgattgcaaatgagccacaaatacaaacttaaatacaaccattagagataaaatagtaaactaacataaaa 490  Q
    |||||||||| || ||||||||||||  ||| ||||| |||||||||||||| |||||||||||||  ||||||||    
T  28105146 ttgattgatttcatatgagccacaaaggcaagcttaagtacaaccattagaggtaaaatagtaaaccgacataaaa 28105221  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 546 - 633
Target Start/End: Original strand, 1639264 - 1639351
Alignment:
Q  546 tccccttcaaacatcatgttcctcgaggatgaaaattccaaaataccatgcttaagaggtaaagtctttaatttaagtagaattgttg 633  Q
    ||||||||||||||| |  ||||| ||||||||||||||||| ||||||||||| |||| ||||||||  |||| |||||| ||||||    
T  1639264 tccccttcaaacatccttgtcctcaaggatgaaaattccaaagtaccatgcttaggaggaaaagtcttccatttgagtagacttgttg 1639351  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 1639186 - 1639231
Alignment:
Q  262 tgtaacagataaatggattttagagacgaactgataaaattcgtac 307  Q
    |||||| |||||||||||||||| ||||||| |||||||| |||||    
T  1639186 tgtaacggataaatggattttagggacgaaccgataaaatccgtac 1639231  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 415 - 538
Target Start/End: Complemental strand, 38307649 - 38307517
Alignment:
Q  415 ttgattgattgcaaatgagccacaaatacaaacttaaatacaaccatta--------gagataaaatagtaaactaacataaaataaaa-tactatttaa 505  Q
    |||||||||| || ||||||||||||  ||| |||||||||||||||||        ||| |||||||||||||| ||||||||||||| ||||||||||    
T  38307649 ttgattgatttcatatgagccacaaaggcaagcttaaatacaaccattactccattagaggtaaaatagtaaactgacataaaataaaactactatttaa 38307550  T
Q  506 aataagctaccactctagtaatttcttgttaca 538  Q
    ||| | ||||||  ||| ||||| | |||||||    
T  38307549 aattaactaccaaactactaattccctgttaca 38307517  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 415 - 510
Target Start/End: Complemental strand, 5181018 - 5180924
Alignment:
Q  415 ttgattgattgcaaatgagccacaaatacaaacttaaatacaaccattagagataaaatagtaaactaacataaaataaaatactatttaaaataa 510  Q
    |||||||||| || |||| ||| ||| ||||||||||||||||| ||||   ||||||||||||||| ||||||  |||| ||| |||||||||||    
T  5181018 ttgattgatttcatatgaaccataaagacaaacttaaatacaactattaagtataaaatagtaaactcacataaggtaaattac-atttaaaataa 5180924  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 323 - 404
Target Start/End: Original strand, 11233570 - 11233649
Alignment:
Q  323 tcaatgattgaatgagatcctatgatgaagaatgaaatgaaaaatattagagagagttttcatagagaagaagataagtttt 404  Q
    |||||||||||||||| |||  ||||||||| | || | || | ||||  ||||||||||||||||||||||||||||||||    
T  11233570 tcaatgattgaatgagttccggtgatgaagagtaaatttaatagtatt--agagagttttcatagagaagaagataagtttt 11233649  T

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Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 316 - 388
Target Start/End: Original strand, 29053692 - 29053764
Alignment:
Q  316 agagaattcaatgattgaatgagatcctatgatgaagaatgaaatgaaaaatattagagagagttttcataga 388  Q
    |||||| |||||||||||||||  | | |||||||||| | || | |||||||  ||||||||||||||||||    
T  29053692 agagaactcaatgattgaatgaacttcaatgatgaagattaaatttaaaaatacaagagagagttttcataga 29053764  T

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