View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14421_high_8 (Length: 456)
Name: NF14421_high_8
Description: NF14421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14421_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 38857208 - 38856964
Alignment:
| Q |
10 |
acatcatcacacaaatcaaacacaca--gaaaattttaatttaactaaaaacatagggttataaaaacatagtttgatattatttagaatcagtttaatt |
107 |
Q |
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| T |
38857208 |
acatcatcacacaaatcaaacacacaaagaaaattttaatttaactaaaaacatagggttatata----tagtttgatattatttagaatcagtttaaaa |
38857113 |
T |
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| Q |
108 |
ttgtttaaaattagttctgattagttattagttagctttattcattatctccactgtataaaatgaccgacatacattcatttgtaatgaatttcttcat |
207 |
Q |
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| T |
38857112 |
tagttaaaaattagttctgattagttattagttagctttattcattatctccactgtataaaatga---gcatatattaatttgtaatcagtttcttcat |
38857016 |
T |
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| Q |
208 |
actttcaatttcaacaaaaaataaagaaatctaccatgtacaataaattcaa |
259 |
Q |
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| T |
38857015 |
actttcaatttcaacaaaaaataaacaaatctaccatgtacaataaattcaa |
38856964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 327 - 456
Target Start/End: Complemental strand, 38856981 - 38856852
Alignment:
| Q |
327 |
catgtacaatagttgtaagaaattaacctggaaggggaacatcaagaagctgaccagctagaaggtttttagggtcatcaagatcgttgagtgacaatag |
426 |
Q |
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| T |
38856981 |
catgtacaataaattcaagaaattaacctggaaggggaacatcaagaagctgaccagctagaaggtttttagggtcatcaagatcgttgagtgacagcag |
38856882 |
T |
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| Q |
427 |
agtctgttgacgagtagcatattgttgagc |
456 |
Q |
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| T |
38856881 |
agtctgttgactaatagcatattgttgagc |
38856852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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