View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14421_high_9 (Length: 441)
Name: NF14421_high_9
Description: NF14421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14421_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 11 - 426
Target Start/End: Complemental strand, 4130282 - 4129867
Alignment:
| Q |
11 |
caaaggaccctctacctagttcttcactaaaaccccatgtagcttcttttaatgcgtcgtaactaaacgaacataaatttgtttccaccagagttgcagc |
110 |
Q |
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| T |
4130282 |
caaaggaccctctacctagttcttcactaaaaccccatgtagcttcttttaatgcgtcgtaactaaatgaacataaatttgtttccaccagagttgcagc |
4130183 |
T |
|
| Q |
111 |
ttggacaacccttttcggcttcaacaaagtcataaaaacaaccgcagctaagagtatgctattgaagacagtggaactaataagtaaaccttgaagaatc |
210 |
Q |
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| T |
4130182 |
ttggacaacccttttcggcttcaacaaagtcataaaaacaaccgcagctaagagtatgctattgaagacagtggaactaataagtaaaccttgaagaatc |
4130083 |
T |
|
| Q |
211 |
ggcttaacccggtcgtgtttcttcgaatcgtgtgtagttgaagaaggaccaaaaggagaaactcttgttttcacaagtaccaattgtccaccactttgtg |
310 |
Q |
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| T |
4130082 |
ggcttaacccggtcgtctttcttcaaatcgtgtgtagttgaagaaggaccaaaaggagaaactcttgttttcacaagtaccaattgtccaccactttgtg |
4129983 |
T |
|
| Q |
311 |
ctcttccattagcaataggcaatcttttcttccaacaagtattgttattgaaaactgcaacagcacacatgcaatcatgcaaacaagattgttgacaatc |
410 |
Q |
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| T |
4129982 |
ctcttccattagcaataggcaatcttttcttccaacaagtattgttattgaaaactgcaacagcacacatgcaatcatgcaaacaagattgttgacaatc |
4129883 |
T |
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| Q |
411 |
ctgttgagaataaggt |
426 |
Q |
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| T |
4129882 |
ctgttgagaataaggt |
4129867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 11 - 425
Target Start/End: Complemental strand, 4107101 - 4106681
Alignment:
| Q |
11 |
caaaggaccctctacctagttcttcactaaaaccccatgtagcttcttttaatgcgtcgtaactaaacgaacataaatttgtttccaccagagttgcagc |
110 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||| | |
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| T |
4107101 |
caaaggaacctctacctagttcttcaataaaaccccatgtagcttcttttaacgcgtcataactaaacgaacataaatttgtttccaagagagttgtgcc |
4107002 |
T |
|
| Q |
111 |
ttggacaacccttttcggcttcaacaaagtcataaaaacaaccgcagctaagagtatgctattgaagacagtggaactaataagtaaaccttgaagaatc |
210 |
Q |
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| T |
4107001 |
tacgacaacccttttcggcttcaacaaagtcaccaaaacaactgcagccaagagtatgctattgaagacagctgaaccaattagtagacctcgaagaatc |
4106902 |
T |
|
| Q |
211 |
ggcttaacccggtcgtgtttcttcgaatcgtgtgtagttgaagaa------------ggaccaaaaggagaaactcttgttttcacaagtaccaattgtc |
298 |
Q |
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|| ||||| ||| || ||||||| ||| |||| |||| | ||||| |||||||||||||||||| | |||||| || | | |
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| T |
4106901 |
gggttaacttggttgtctttcttcaaat------tagtggaaggactagcacctattttaccaagaggagaaactcttgtttttataagtactaaattac |
4106808 |
T |
|
| Q |
299 |
caccactttgtgctcttccattagcaataggcaatcttttcttccaacaagtattgttattgaaaactgcaacagcacacatgcaatcatgcaaacaaga |
398 |
Q |
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||||||||| | ||||||||||||| | |||| ||||||||||||| ||| | | |||| |||| || |||||| |||||| ||||||||||||||||| |
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| T |
4106807 |
caccactttcttctcttccattagctagaggcgatcttttcttccagcaattttggttactgaagacaacaacagaacacatacaatcatgcaaacaaga |
4106708 |
T |
|
| Q |
399 |
ttgttgacaatcctgttgagaataagg |
425 |
Q |
| |
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||||||||| || |||||||||||||| |
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| T |
4106707 |
ttgttgacagtcatgttgagaataagg |
4106681 |
T |
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