View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14421_low_1 (Length: 1024)
Name: NF14421_low_1
Description: NF14421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14421_low_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 901; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 901; E-Value: 0
Query Start/End: Original strand, 1 - 1024
Target Start/End: Complemental strand, 47308022 - 47307014
Alignment:
| Q |
1 |
taatgaatcaataaataaatataaatacacatatacaaactatcctaaaaacggatgtatgtgccatttgggtaaagaaaatatcaggataagttcaagt |
100 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47308022 |
taataaatcaataaataaatataaatacacatagacaaactatcctaaaaacggatgtatgtgccatttgggtaaagaaaatatcaggataagttcaagt |
47307923 |
T |
|
| Q |
101 |
gcaccttagtattccgctagcccgggttgtaattcaatctagttcgtatgtaatactgaagtgccaccgacagcaccgccataaacggagtgccaggagt |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47307922 |
gcaccttagtattccgccagcccgggttgtaattcaatctagtttgtatgtaatactgaagtgccaccgacagcactgccataaacggagtgccaggagt |
47307823 |
T |
|
| Q |
201 |
aatgacatttgagtcatgagtctcggttttttctttggaagtcaaaagttctatctgatcagcaaattcattcctaagtctttcctcttcagcttcctac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47307822 |
aatgacatttgagtcatgagtctcggttttttctttggaagtcaaaagttctatctgatcagcaaattcattcctaagcctttcctcttcagcttcctac |
47307723 |
T |
|
| Q |
301 |
aaccccacactataactcaaaatttcatcacagaaatagtaagagaccatcttaaacaaaggcacattcatttccttacagcctcagctgcatcttttgc |
400 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47307722 |
aacaccacactataactcaaaatttcatcacagaaatagtaagagaccatcgtaaacaaaggcacattcatttccttacagcctcagctgcatcttttgc |
47307623 |
T |
|
| Q |
401 |
ggctcgaaaacggcgagaacgttgctggttcattttggctcttggtgcaacaccatctgaacgggcaagcgaaataaatatggaaaagaaatggttggag |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47307622 |
ggctcgaaaacggcgagaacgttgctggttcattttggctcttggtgcaacaccatctgaacgggcaagagaaataaatatggaaaagaaatggttggag |
47307523 |
T |
|
| Q |
501 |
tgagaaatcagttcatagttaaataagacgtacaatcttaacattacaaaatatagacaaaaagattgcagcattccaaaaattggatacaagttttaat |
600 |
Q |
| |
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||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47307522 |
tgagaaatcagttcaaagttaaataagacatacaatcttaacattacaaaatatagacaaaaagattgcagcattccaaaaattggatacaagttttaat |
47307423 |
T |
|
| Q |
601 |
ttttccatattggcattttctgtttttacaaacacttatctaagtattcacttgaaaagatttgcagtaaattttaatgctcaaaccacttcgatttgtg |
700 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47307422 |
t---------------tttctgtttttacaaacacttatctaagtattcacttgaaaagatttgcagtaaattttaatgctcaaaccacttcgaattgtg |
47307338 |
T |
|
| Q |
701 |
tgtgttaagttacaaataattgaaaagaaattgaaggcttaacggaaaccaagtggctagaggttaataaacatctttattgtcattactcggttttcga |
800 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47307337 |
tgtgttaagttacaaataattgaaaagaaattgaaggcttaatggaaaccaagtggctagaggttaataaacatctttattgtcattactcggttttcga |
47307238 |
T |
|
| Q |
801 |
catcttggatttataacttaaaaagaaggcaacgaggatccggtaacattagtaaatttgacacgtatatgagtgaagttagtgcattacataaatacnn |
900 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47307237 |
catcttggatttataacttaaaaagaaggcaacgaggatccggtaacattagtaaatttgacacgtatatgagtgaagttagtgcattacataaatacaa |
47307138 |
T |
|
| Q |
901 |
nnnnncaataaaatgtgacataccaattgcaagataaagaagcttccttggtcgaaccaatgaaaagagatggtcgatgtagtcaaacattgatttaaat |
1000 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47307137 |
aaaaacaataaaatgtgacataccaattgcaagataaagaagcttccttggtcgaaccaatgaaaagagatggtcgatgtagtcaaacattgatttaaat |
47307038 |
T |
|
| Q |
1001 |
acatcatcataggtagcaggtgct |
1024 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
47307037 |
acatcatcataggtagcaggtgct |
47307014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 375 - 459
Target Start/End: Original strand, 36269055 - 36269139
Alignment:
| Q |
375 |
cttacagcctcagctgcatcttttgcggctcgaaaacggcgagaacgttgctggttcattttggctcttggtgcaacaccatctg |
459 |
Q |
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|||||||||||||||||||||||||| ||||| || || || ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36269055 |
cttacagcctcagctgcatcttttgcagctcggaaccgtcgggaacgttgctgattcattttggctcttggtgcaacaccatctg |
36269139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 919 - 972
Target Start/End: Original strand, 36270503 - 36270556
Alignment:
| Q |
919 |
cataccaattgcaagataaagaagcttccttggtcgaaccaatgaaaagagatg |
972 |
Q |
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||||||| ||||||| ||||||||||||||||| |||||||| ||||||||||| |
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| T |
36270503 |
cataccagttgcaaggtaaagaagcttccttggacgaaccaaagaaaagagatg |
36270556 |
T |
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