View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14421_low_12 (Length: 414)

Name: NF14421_low_12
Description: NF14421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14421_low_12
NF14421_low_12
[»] chr7 (31 HSPs)
chr7 (44-397)||(41746763-41747115)
chr7 (193-397)||(2798781-2798985)
chr7 (190-390)||(28226736-28226936)
chr7 (190-389)||(43368971-43369167)
chr7 (235-397)||(2273282-2273441)
chr7 (222-369)||(10025840-10025987)
chr7 (185-397)||(16197265-16197476)
chr7 (308-400)||(7808813-7808905)
chr7 (300-387)||(8614631-8614717)
chr7 (304-379)||(17270042-17270117)
chr7 (303-380)||(35792619-35792696)
chr7 (300-361)||(37124629-37124690)
chr7 (300-389)||(39599464-39599558)
chr7 (300-397)||(41690199-41690296)
chr7 (300-379)||(3835361-3835440)
chr7 (300-379)||(4567815-4567894)
chr7 (300-390)||(10534533-10534623)
chr7 (304-369)||(1719630-1719695)
chr7 (300-368)||(46094481-46094547)
chr7 (319-369)||(21529213-21529263)
chr7 (190-288)||(33258941-33259039)
chr7 (301-390)||(2271450-2271537)
chr7 (300-377)||(12394659-12394736)
chr7 (314-370)||(33258858-33258914)
chr7 (303-350)||(47541915-47541962)
chr7 (334-392)||(1752190-1752248)
chr7 (322-392)||(27229031-27229101)
chr7 (301-359)||(27723735-27723793)
chr7 (352-397)||(10026072-10026117)
chr7 (186-251)||(39599316-39599381)
chr7 (300-332)||(39430040-39430072)
[»] chr1 (19 HSPs)
chr1 (186-395)||(10430081-10430289)
chr1 (190-380)||(19270110-19270297)
chr1 (215-390)||(13254172-13254347)
chr1 (300-389)||(45925834-45925923)
chr1 (185-397)||(41117401-41117613)
chr1 (195-389)||(4395534-4395726)
chr1 (300-397)||(2752071-2752168)
chr1 (234-377)||(11795508-11795650)
chr1 (301-389)||(6295303-6295391)
chr1 (189-353)||(30281079-30281241)
chr1 (334-397)||(43021311-43021374)
chr1 (300-394)||(21965736-21965830)
chr1 (190-343)||(1394824-1394976)
chr1 (257-366)||(1453955-1454064)
chr1 (209-288)||(43021479-43021558)
chr1 (300-361)||(36319550-36319611)
chr1 (300-356)||(52415605-52415661)
chr1 (343-397)||(39157260-39157314)
chr1 (233-278)||(36319484-36319529)
[»] scaffold0188 (1 HSPs)
scaffold0188 (197-390)||(5604-5798)
[»] chr2 (25 HSPs)
chr2 (181-397)||(4700652-4700871)
chr2 (185-390)||(11084317-11084522)
chr2 (300-397)||(16806134-16806231)
chr2 (300-397)||(16845415-16845512)
chr2 (190-397)||(42871903-42872106)
chr2 (300-390)||(25713921-25714011)
chr2 (190-397)||(15507868-15508075)
chr2 (304-390)||(44898602-44898688)
chr2 (192-390)||(20170915-20171107)
chr2 (300-363)||(21253028-21253091)
chr2 (304-361)||(29408442-29408499)
chr2 (190-364)||(41541618-41541792)
chr2 (190-397)||(4317027-4317238)
chr2 (233-361)||(3309451-3309578)
chr2 (304-386)||(36243626-36243708)
chr2 (192-288)||(43043277-43043372)
chr2 (322-397)||(45272930-45273005)
chr2 (190-331)||(12412943-12413085)
chr2 (190-331)||(12425003-12425145)
chr2 (190-332)||(34424377-34424519)
chr2 (323-390)||(149973-150040)
chr2 (215-359)||(1397936-1398075)
chr2 (302-385)||(25713605-25713688)
chr2 (303-369)||(1405825-1405890)
chr2 (325-369)||(1769840-1769884)
[»] chr8 (15 HSPs)
chr8 (208-390)||(14896994-14897176)
chr8 (300-395)||(27232091-27232186)
chr8 (300-390)||(34039300-34039390)
chr8 (303-389)||(32234112-32234198)
chr8 (304-397)||(30887514-30887607)
chr8 (190-390)||(5871261-5871461)
chr8 (300-367)||(7695004-7695071)
chr8 (312-390)||(11087585-11087663)
chr8 (300-389)||(34146692-34146781)
chr8 (301-361)||(1530314-1530374)
chr8 (186-350)||(29315232-29315396)
chr8 (303-376)||(35970481-35970553)
chr8 (300-389)||(38401960-38402048)
chr8 (190-346)||(35970077-35970232)
chr8 (304-367)||(43026167-43026229)
[»] chr3 (27 HSPs)
chr3 (188-390)||(1405301-1405506)
chr3 (190-390)||(296870-297070)
chr3 (300-397)||(45667848-45667945)
chr3 (233-380)||(2094198-2094345)
chr3 (300-397)||(45647007-45647104)
chr3 (190-393)||(2599475-2599678)
chr3 (190-397)||(16236991-16237198)
chr3 (268-385)||(376138-376255)
chr3 (317-397)||(6749355-6749435)
chr3 (301-370)||(633144-633213)
chr3 (300-393)||(22722256-22722349)
chr3 (186-343)||(34669145-34669303)
chr3 (300-400)||(39493062-39493162)
chr3 (190-356)||(9589211-9589380)
chr3 (184-371)||(12568819-12569005)
chr3 (184-371)||(13545283-13545469)
chr3 (303-397)||(5494034-5494129)
chr3 (303-397)||(388922-389016)
chr3 (190-350)||(38750456-38750615)
chr3 (308-369)||(23272481-23272542)
chr3 (301-356)||(21916015-21916070)
chr3 (190-249)||(34824257-34824316)
chr3 (233-377)||(42735062-42735205)
chr3 (186-284)||(21959319-21959417)
chr3 (317-397)||(6472366-6472444)
chr3 (300-345)||(19229368-19229413)
chr3 (301-345)||(45759172-45759216)
[»] chr5 (22 HSPs)
chr5 (185-390)||(8544124-8544329)
chr5 (314-397)||(18412892-18412975)
chr5 (190-367)||(17201878-17202055)
chr5 (184-369)||(1584145-1584326)
chr5 (185-361)||(6428534-6428710)
chr5 (217-389)||(32474594-32474765)
chr5 (319-397)||(25612841-25612919)
chr5 (302-377)||(17200502-17200577)
chr5 (302-397)||(19804173-19804268)
chr5 (302-396)||(12436247-12436341)
chr5 (190-332)||(20202163-20202305)
chr5 (300-361)||(28620497-28620558)
chr5 (215-292)||(36244519-36244596)
chr5 (300-389)||(42673580-42673669)
chr5 (190-284)||(39585353-39585447)
chr5 (301-387)||(39940231-39940317)
chr5 (186-263)||(1584060-1584137)
chr5 (301-369)||(14967814-14967882)
chr5 (334-397)||(17203021-17203085)
chr5 (319-361)||(11991809-11991851)
chr5 (300-361)||(11825291-11825352)
chr5 (233-278)||(12436179-12436224)
[»] chr6 (15 HSPs)
chr6 (230-390)||(23410952-23411112)
chr6 (215-389)||(14093235-14093409)
chr6 (300-397)||(8049771-8049868)
chr6 (302-397)||(31660863-31660958)
chr6 (300-390)||(25056986-25057075)
chr6 (300-367)||(6110733-6110800)
chr6 (318-397)||(8049668-8049747)
chr6 (238-397)||(2437273-2437432)
chr6 (339-396)||(8461116-8461173)
chr6 (334-383)||(14093027-14093076)
chr6 (309-397)||(31656001-31656089)
chr6 (190-288)||(6026561-6026659)
chr6 (225-332)||(21526955-21527062)
chr6 (312-369)||(4123118-4123175)
chr6 (300-356)||(26252118-26252174)
[»] chr4 (30 HSPs)
chr4 (300-397)||(9808032-9808129)
chr4 (215-361)||(24073359-24073505)
chr4 (185-371)||(22349381-22349562)
chr4 (194-389)||(45666729-45666922)
chr4 (308-371)||(53370169-53370232)
chr4 (257-390)||(49299389-49299522)
chr4 (233-390)||(53393792-53393948)
chr4 (300-367)||(50721378-50721445)
chr4 (184-274)||(23674118-23674208)
chr4 (300-397)||(38840006-38840103)
chr4 (233-386)||(17330842-17330994)
chr4 (233-397)||(46250268-46250430)
chr4 (190-345)||(26625589-26625740)
chr4 (184-278)||(1821066-1821160)
chr4 (303-397)||(6949443-6949537)
chr4 (300-397)||(34031582-34031678)
chr4 (185-359)||(47943956-47944124)
chr4 (334-389)||(30912827-30912882)
chr4 (189-284)||(49263595-49263690)
chr4 (190-284)||(55344109-55344204)
chr4 (190-361)||(37209545-37209714)
chr4 (301-397)||(25494212-25494306)
chr4 (235-359)||(19443092-19443211)
chr4 (233-337)||(41503034-41503138)
chr4 (320-390)||(9089141-9089211)
chr4 (191-330)||(46430403-46430542)
chr4 (304-345)||(2685085-2685126)
chr4 (301-346)||(20782907-20782952)
chr4 (190-246)||(24537905-24537961)
chr4 (300-332)||(37371134-37371166)
[»] scaffold0841 (2 HSPs)
scaffold0841 (300-390)||(4258-4348)
scaffold0841 (300-385)||(3941-4026)
[»] scaffold1327 (1 HSPs)
scaffold1327 (301-390)||(1195-1284)
[»] scaffold0005 (1 HSPs)
scaffold0005 (233-360)||(257236-257363)
[»] scaffold1986 (1 HSPs)
scaffold1986 (301-390)||(564-653)
[»] scaffold0637 (1 HSPs)
scaffold0637 (301-397)||(3766-3862)


Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 44 - 397
Target Start/End: Original strand, 41746763 - 41747115
Alignment:
Q  44 cgtgctcttaaaatattgtttaaataatccataaaatgacttttgaaaatacaagttaaatacatataaagaagtatatacataaattttaatgaaaaaa 143  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41746763 cgtgctcttaaaatattgtttaaataatccatagaatgacttttgaaaatacaagttaaatacatataaagaagtatatacataaatttttatgaaaaaa 41746862  T
Q  144 ttatcaattttattgcttaaagccttaaacaatact-cctatattcttttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttg 242  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41746863 ttatcaattttattgcttaaagccttaaacaatactccctatgttcttttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtattttta 41746962  T
Q  243 cacatttacctcatattatactcttattttaatccattaatatatttctannnnnnngcacacactttctcttttcaataaatttaatattttatctttc 342  Q
    ||||||||||||||||| ||||||| || |||||||||||||||||||||        ||| ||||||||||||||||||||||||||||||||||||||    
T  41746963 cacatttacctcatattgtactctt-ttgtaatccattaatatatttctattttttt-cacgcactttctcttttcaataaatttaatattttatctttc 41747060  T
Q  343 tctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  41747061 tctcgtaacaaacaattgttagttactatatttttctctaacaaatttttatttt 41747115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 193 - 397
Target Start/End: Complemental strand, 2798985 - 2798781
Alignment:
Q  193 ttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatatttcta 292  Q
    |||| |||||||||||||||| |||| |||||||| ||| ||||||||||||  ||||| || |||||||| |||||| |||||||  ||||||||||||    
T  2798985 ttaaatgtcgttttgaaatattaacaccaaattagtgaagtgtatttttgcatctttacttcctattatacccttattctaatccaccaatatatttcta 2798886  T
Q  293 nnnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattctt 392  Q
           |||||||||||||||||  |||||||||||||| ||||||||| ||||||| |||||||| ||| |||||||||||||||| ||||||||| |    
T  2798885 tttttttgcacacactttctctttctaataaatttaatatgttatctttcgctcgtaacaaacaatttttaattactatatttttctccaacaaattcct 2798786  T
Q  393 atttt 397  Q
    |||||    
T  2798785 atttt 2798781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 190 - 390
Target Start/End: Complemental strand, 28226936 - 28226736
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatattt 289  Q
    |||||||||||||||||| ||||| |||| |||||||||||  |||||||||| |  ||||| || |||||||| |||||||||||||| |||||||||     
T  28226936 tttttaagtgtcgttttggaatattaacaccaaattagcgatgtgtatttttgtatctttacttcctattatacccttattttaatccaataatatattc 28226837  T
Q  290 ctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaatt 389  Q
    |||       ||||||| | | ||||| ||||||||||||||| |||||||||| |||||| |||||||||||||||| ||| |||||||| ||||||||    
T  28226836 ctattgttttgcacacattatatctttccaataaatttaatatgttatctttctatcgtaacaaacaattgttagttaatatctttttctccaacaaatt 28226737  T
Q  390 c 390  Q
    |    
T  28226736 c 28226736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 190 - 389
Target Start/End: Complemental strand, 43369167 - 43368971
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatattt 289  Q
    |||||||||||||||||  ||||| |||| |||||||   || |||| |||||||| ||||| |  | |||||| |||| |||||||||  |||||||||    
T  43369167 tttttaagtgtcgttttagaatattaacaccaaattaaa-aagtgtaattttgcacctttacttactgttatacccttactttaatccacaaatatattt 43369069  T
Q  290 ctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaatt 389  Q
    |||       |||||||||  |||||||||||||||||||||| |||| |||||||||||| || ||||||||||||| ||| |||||||| ||||||||    
T  43369068 ctatttttttgcacacact--ctcttttcaataaatttaatatgttatttttctctcgtaacaagcaattgttagttattatttttttctccaacaaatt 43368971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 235 - 397
Target Start/End: Original strand, 2273282 - 2273441
Alignment:
Q  235 tatttttgcacatttacctcatattatactcttattttaatccattaatatatttctannnnnnngcacacactttctcttttcaataaatttaatattt 334  Q
    ||||||||||| ||||| || |||||||| |||||||||||  |  |||||||| |||        |||||||||||||||||||||||||||||| ||     
T  2273282 tatttttgcacctttacttcctattatacccttattttaatgtaccaatatattcctattttttt-cacacactttctcttttcaataaatttaatgtt- 2273379  T
Q  335 tatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
     ||||||||||||||| |||||||||||||||| ||| |||||||  ||||||||||||||||    
T  2273380 -atctttctctcgtaacaaacaattgttagttattatctttttcttcaacaaattcttatttt 2273441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 222 - 369
Target Start/End: Original strand, 10025840 - 10025987
Alignment:
Q  222 aattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatatttctannnnnnngcacacactttctcttttcaat 321  Q
    |||||||||| | ||||||||||||||||| || | |||||| ||||||||||||||| |||| |||  |        ||||||| ||||||||||||||    
T  10025840 aattagcgaagtttatttttgcacatttacttcttgttatacccttattttaatccatcaatacattcatgttttttagcacacaatttctcttttcaat 10025939  T
Q  322 aaatttaatattttatctttctctcgtaataaacaattgttagttact 369  Q
    ||||||||||| |||||||||| | |||| |||||||||||| |||||    
T  10025940 aaatttaatatgttatctttcttttgtaacaaacaattgttaattact 10025987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 185 - 397
Target Start/End: Complemental strand, 16197476 - 16197265
Alignment:
Q  185 attcttttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaata 284  Q
    |||| |||||||||||| ||||  || || |||| |||| ||| ||  ||||||||||||||||| | |  |||||||| || |||||||||||| ||||    
T  16197476 attcctttttaagtgtctttttagaaaattaacaccaaaatagtgatgtgtatttttgcacattttctttctattataccctcattttaatccatcaata 16197377  T
Q  285 tatttctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaac 384  Q
     ||| |||       ||| | ||||| ||||| ||||||||||||||| |||||||||||| |||| |||||||||| ||||| ||| ||||| || |||    
T  16197376 aattcctatttttt-gcataaactttatctttccaataaatttaatatgttatctttctcttgtaacaaacaattgtcagttattatctttttttccaac 16197278  T
Q  385 aaattcttatttt 397  Q
    |||||| ||||||    
T  16197277 aaattcctatttt 16197265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 400
Target Start/End: Original strand, 7808813 - 7808905
Alignment:
Q  308 tttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttattttctt 400  Q
    ||||||||||||||||||||||||| |||| |||||||| ||| |||||| |||||||||||   | |||||| |||||||| |||| |||||    
T  7808813 tttctcttttcaataaatttaatatgttatatttctctcataacaaacaaatgttagttactccctctttctccaacaaatttttatattctt 7808905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 300 - 387
Target Start/End: Original strand, 8614631 - 8614717
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaa 387  Q
    ||||||||||| |||||  |||||||| ||||| ||||||||||||||||| |||||||||| ||||| ||| |||||||| ||||||    
T  8614631 gcacacactttatctttctaataaatt-aatatattatctttctctcgtaacaaacaattgtcagttattatctttttctccaacaaa 8614717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 304 - 379
Target Start/End: Complemental strand, 17270117 - 17270042
Alignment:
Q  304 acactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttct 379  Q
    |||||||||| |||||||| ||||||||| |||| |||||||||||| ||||| ||||||| |||||| |||||||    
T  17270117 acactttctcgtttcaatatatttaatatattatatttctctcgtaacaaacatttgttagatactatctttttct 17270042  T

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Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 380
Target Start/End: Original strand, 35792619 - 35792696
Alignment:
Q  303 cacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctc 380  Q
    |||||||| |||||  |||||||||||||| ||||||||||||||||| |||||||||| | ||| ||| ||||||||    
T  35792619 cacactttatctttctaataaatttaatatgttatctttctctcgtaacaaacaattgtaacttattatctttttctc 35792696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 37124690 - 37124629
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgt 361  Q
    ||||||||||| ||||| ||||||||||||||| ||||||||||||| ||| ||||||||||    
T  37124690 gcacacactttatctttccaataaatttaatatgttatctttctctcataacaaacaattgt 37124629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 389
Target Start/End: Original strand, 39599464 - 39599558
Alignment:
Q  300 gcacacactttctc--ttttcaataaatttaatattttatctttctctcgtaataaacaattgtta---gttactatatttttctctaacaaatt 389  Q
    ||||||||||||||  ||||||||||||||||||| |||| ||||| |||||| |||| |||||||   |||||||| |||||||| ||||||||    
T  39599464 gcacacactttctctcttttcaataaatttaatatcttatttttctttcgtaacaaacgattgttagttgttactatctttttctccaacaaatt 39599558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 397
Target Start/End: Complemental strand, 41690296 - 41690199
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    ||||| ||||| | ||| ||||||||||||||| |||| ||| |||||||| |||||||||| | ||| ||| |||||||| ||||||||| ||||||    
T  41690296 gcacaaactttatatttccaataaatttaatatgttatatttatctcgtaacaaacaattgtcaattattatctttttctccaacaaattcctatttt 41690199  T

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Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 379
Target Start/End: Original strand, 3835361 - 3835440
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttct 379  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||||| |||| |||||| | | ||||| ||| |||||||    
T  3835361 gcacacactttatctttccaataaatttaatatgttatctttctcttgtaacaaacaaatttcagttattatttttttct 3835440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 379
Target Start/End: Complemental strand, 4567894 - 4567815
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttct 379  Q
    ||||||||||| ||||| ||||||||||||||| |||| |||||||| ||| |||||||||| | ||| ||| |||||||    
T  4567894 gcacacactttatctttccaataaatttaatatgttatatttctctcataacaaacaattgtcaattattatctttttct 4567815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 390
Target Start/End: Original strand, 10534533 - 10534623
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattc 390  Q
    ||||||| ||| | |||| |||||||||||||| |||||||| | |||||| ||||||||||  |||| ||| |||||||| |||||||||    
T  10534533 gcacacattttatttttttaataaatttaatatgttatctttatgtcgtaacaaacaattgtctgttattatctttttctccaacaaattc 10534623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 369
Target Start/End: Original strand, 1719630 - 1719695
Alignment:
Q  304 acactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttact 369  Q
    ||||||||||||||||||||||||||| | |||||| || ||| | | ||||||||||||||||||    
T  1719630 acactttctcttttcaataaatttaatgtgttatctatccctcatcacaaacaattgttagttact 1719695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 368
Target Start/End: Complemental strand, 46094547 - 46094481
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttac 368  Q
    |||||||||||||||||| |||||||||||||| | |  ||| |||| |||||||||||||||||||||    
T  46094547 gcacacactttctctttttaataaatttaatatatca--tttttctcataataaacaattgttagttac 46094481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 369
Target Start/End: Original strand, 21529213 - 21529263
Alignment:
Q  319 aataaatttaatattttatctttctctcgtaataaacaattgttagttact 369  Q
    ||||||| |||||| ||||||||||||| ||| ||||||||||||||||||    
T  21529213 aataaatctaatatgttatctttctctcataacaaacaattgttagttact 21529263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 288
Target Start/End: Complemental strand, 33259039 - 33258941
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatatt 288  Q
    |||||||||||||||||  ||||| |||| |||| || |||| |||||||||| | |||| | || |||||||| || |||||||||||  ||||||||    
T  33259039 tttttaagtgtcgttttagaatattaacaccaaaataacgaagtgtatttttgtagattttcttcctattataccctcattttaatccaccaatatatt 33258941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 390
Target Start/End: Original strand, 2271450 - 2271537
Alignment:
Q  301 cacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattc 390  Q
    ||||| |||| ||||| |||||| |||||||| |||| |||||||||||| |||||||||| ||||| ||| | |||||| |||||||||    
T  2271450 cacaccctttatctttccaataa-tttaatatgttat-tttctctcgtaacaaacaattgtcagttattatctctttctccaacaaattc 2271537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 12394736 - 12394659
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatattttt 377  Q
    ||||||| |||  |||| |||||||||||| || ||||||||||||| ||| |||||||||| ||||| ||| |||||    
T  12394736 gcacacattttagctttccaataaatttaacatgttatctttctctcttaacaaacaattgtcagttattatcttttt 12394659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 370
Target Start/End: Complemental strand, 33258914 - 33258858
Alignment:
Q  314 ttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttacta 370  Q
    |||||||||||||||||||  ||||||||||| |||| ||||| |||||| ||||||    
T  33258914 ttttcaataaatttaatatggtatctttctcttgtaacaaacatttgttaattacta 33258858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 350
Target Start/End: Complemental strand, 47541962 - 47541915
Alignment:
Q  303 cacactttctcttttcaataaatttaatattttatctttctctcgtaa 350  Q
    |||||||| ||||| ||||||||||||||| |||| ||||||||||||    
T  47541962 cacactttatctttccaataaatttaatatgttatatttctctcgtaa 47541915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 392
Target Start/End: Original strand, 1752190 - 1752248
Alignment:
Q  334 ttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattctt 392  Q
    ||||||||||||  ||| |||||||| ||||||||| |||||||||  |||||||||||    
T  1752190 ttatctttctcttataacaaacaattattagttactctatttttcttcaacaaattctt 1752248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 392
Target Start/End: Original strand, 27229031 - 27229101
Alignment:
Q  322 aaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattctt 392  Q
    ||||||||| | |||||||| || | ||| |||||||||||||||||| | |||||||  |||||||||||    
T  27229031 aaatttaatgtgttatctttatcacataacaaacaattgttagttactctctttttcttcaacaaattctt 27229101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 359
Target Start/End: Complemental strand, 27723793 - 27723735
Alignment:
Q  301 cacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaatt 359  Q
    |||||||||| ||||| ||||||||||||||| |||| ||||||  |||| ||||||||    
T  27723793 cacacactttatctttccaataaatttaatatgttatttttctcctgtaacaaacaatt 27723735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 397
Target Start/End: Original strand, 10026072 - 10026117
Alignment:
Q  352 aaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    |||||||||||| ||||||| ||| |||| ||||||||||||||||    
T  10026072 aaacaattgttaattactatttttatctccaacaaattcttatttt 10026117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 39599316 - 39599381
Alignment:
Q  186 ttcttttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttac 251  Q
    ||||||||||| ||||||||   ||||| ||||  ||||||||||| || ||||||||||||||||    
T  39599316 ttcttttttaaatgtcgtttaagaatattaacacgaaattagcgaagtgaatttttgcacatttac 39599381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 332
Target Start/End: Original strand, 39430040 - 39430072
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatat 332  Q
    ||||||||||| |||||||||||||||||||||    
T  39430040 gcacacactttatcttttcaataaatttaatat 39430072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 9e-40; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 186 - 395
Target Start/End: Original strand, 10430081 - 10430289
Alignment:
Q  186 ttcttttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatat 285  Q
    ||||||||||||||| |||||| ||||| |||||||||||||| || |||||||||||| |||||  |  |||||||  ||||||||||||||  |||||    
T  10430081 ttcttttttaagtgttgttttggaatattaacatcaaattagcaaagtgtatttttgcaaatttaatttttattatatccttattttaatccaccaatat 10430180  T
Q  286 atttctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaaca 385  Q
    ||| |||       ||||||||||| ||||| ||||||||||||||  ||||||||||||| ||| ||| |||||||||||||||| |||||||| |||     
T  10430181 attcctacttttt-gcacacactttttctttccaataaatttaatacgttatctttctctcataacaaataattgttagttactatctttttctccaacc 10430279  T
Q  386 aattcttatt 395  Q
    ||||||||||    
T  10430280 aattcttatt 10430289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 190 - 380
Target Start/End: Complemental strand, 19270297 - 19270110
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatattt 289  Q
    |||||||||||||||||||||||| |||| |||||||||||| |||||| ||||||||||   || |||||||| || |||||||||||  |||| |||     
T  19270297 tttttaagtgtcgttttgaaatattaacaccaaattagcgaagtgtattattgcacatttttgtcttattataccctcattttaatccaccaataaattg 19270198  T
Q  290 ctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctc 380  Q
     ||       ||| | ||||||||||| ||||||||||||||||||||||  ||||||||| |||||||||||||||||||| ||||||||    
T  19270197 ttatttttt-gcataaactttctctttccaataaatttaatattttatct--ctctcgtaacaaacaattgttagttactatctttttctc 19270110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 215 - 390
Target Start/End: Original strand, 13254172 - 13254347
Alignment:
Q  215 aacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatatttctannnnnnngcacacactttctct 314  Q
    ||||||||| ||||||  ||||||||||||||||| | ||||||||| |||| |||||||||||| |||| ||| |||        |||||||| | |||    
T  13254172 aacatcaaaatagcgatgtgtatttttgcacattttcttcatattatgctctcattttaatccatcaataaattcctattttttttcacacactatatct 13254271  T
Q  315 tttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattc 390  Q
    || ||||||||||||||| |||| |||||||||||| |||||||||| ||||  ||| |||||||| || ||||||    
T  13254272 ttccaataaatttaatatgttatttttctctcgtaacaaacaattgtcagtttttatctttttctccaaaaaattc 13254347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 300 - 389
Target Start/End: Complemental strand, 45925923 - 45925834
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaatt 389  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||| |||||||||| ||| |||||||| ||| ||||    
T  45925923 gcacacactttctcttttcaataaatttaatatgttatctttctctcctaacaaacatttgttagttattatctttttctccaaccaatt 45925834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 185 - 397
Target Start/End: Complemental strand, 41117613 - 41117401
Alignment:
Q  185 attcttttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaata 284  Q
    ||||||||||||||||| ||||  || || |||| |||| ||||||  ||||||||||||  |||   |  |||||||| || |||||||||||  ||||    
T  41117613 attcttttttaagtgtctttttagaaaattaacaccaaactagcgatgtgtatttttgcattttttttttctattataccctcattttaatccaccaata 41117514  T
Q  285 tatttctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaac 384  Q
     |||| ||       ||||||||||| ||||| ||||||||||||||| ||||||||||||||||| ||||||  || | ||| ||| |||||||  |||    
T  41117513 aatttttatttttttgcacacactttatctttccaataaatttaatatgttatctttctctcgtaacaaacaaacgtcacttattatctttttcttcaac 41117414  T
Q  385 aaattcttatttt 397  Q
    |||||| ||||||    
T  41117413 aaattcctatttt 41117401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 195 - 389
Target Start/End: Original strand, 4395534 - 4395726
Alignment:
Q  195 aagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatatttctann 294  Q
    ||||||||||||| ||| | ||||  ||| ||||||| ||||||||| ||| ||| | || ||||||||  | |||||||||||  |||||||| |||      
T  4395534 aagtgtcgttttggaattttaacacaaaaatagcgaagtgtattttttcaccttttcttcctattataccatcattttaatccaccaatatattcctatt 4395633  T
Q  295 nnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaatt 389  Q
          | |||||||||||||| |||||||||||||  |||||||||| ||||||| ||||  ||||| |||||||| |||||||| ||||||||    
T  4395634 tttctacgcacactttctctttccaataaatttaat--tttatctttccctcgtaacaaacttttgttggttactatctttttctccaacaaatt 4395726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 397
Target Start/End: Complemental strand, 2752168 - 2752071
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    |||||||||||||||||  ||||||||| || | || ||||||||| ||||||||||||||||| ||||| | |||||||  ||||||||||||||||    
T  2752168 gcacacactttctctttcaaataaattttatgtgttgtctttctcttgtaataaacaattgttaattactttctttttcttcaacaaattcttatttt 2752071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 234 - 377
Target Start/End: Original strand, 11795508 - 11795650
Alignment:
Q  234 gtatttttgcacatttacctcatattatactcttattttaatccattaatatatttctannnnnnngcacacactttctcttttcaataaatttaatatt 333  Q
    |||||||||||||||| | ||||||||||| || |||||||||||  |||||||| ||        ||||||||||||||||| |||||||||||||||     
T  11795508 gtatttttgcacattttcttcatattataccctcattttaatccaccaatatattact-tttttttgcacacactttctctttccaataaatttaatatg 11795606  T
Q  334 ttatctttctctcgtaataaacaattgttagttactatattttt 377  Q
    |||| ||| |||  ||| ||||| || ||||||||||| |||||    
T  11795607 ttatatttttcttataacaaacattttttagttactatcttttt 11795650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 389
Target Start/End: Original strand, 6295303 - 6295391
Alignment:
Q  301 cacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaatt 389  Q
    |||||| ||| |||||  || ||||||||||| ||||||||||||||||| ||||||||||  |||| ||| |||||||| ||||||||    
T  6295303 cacacattttatctttctaaaaaatttaatatgttatctttctctcgtaacaaacaattgtcggttattatttttttctccaacaaatt 6295391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 353
Target Start/End: Complemental strand, 30281241 - 30281079
Alignment:
Q  189 ttttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatatt 288  Q
    ||||||||||||||||||||||  |   ||||||| |||| || |||||||||||| |||| | || |||||||| || | |||||| |||||||||||     
T  30281241 ttttttaagtgtcgttttgaaaattttccatcaaaatagcaaagtgtatttttgcatattttcttcctattataccctcaatttaattcattaatatatc 30281142  T
Q  289 tctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataa 353  Q
    ||||       |  |||| ||| ||||||||||||||||||||  |||| ||| |||||||||||    
T  30281141 tctattttttgg--cacagtttatcttttcaataaatttaataagttatatttttctcgtaataa 30281079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 43021374 - 43021311
Alignment:
Q  334 ttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    |||| |||||||| |||||||||||||||||||| ||| |||||||| ||||||||| ||||||    
T  43021374 ttatttttctctcataataaacaattgttagttaatatctttttctccaacaaattcctatttt 43021311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 394
Target Start/End: Original strand, 21965736 - 21965830
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttat 394  Q
    ||||||||||||| | | |||||||| |||| | ||||||||||||  ||| |||||||||||||| ||| | |||||||  |||||||||||||    
T  21965736 gcacacactttctttgtccaataaatataatgtgttatctttctcttataacaaacaattgttagtcactctctttttcttcaacaaattcttat 21965830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 343
Target Start/End: Complemental strand, 1394976 - 1394824
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatattt 289  Q
    |||||||||||||||||  |||||  |||||||||||| ||| ||||||||| ||||||| | |  ||| |||| || |||||||||||  ||||||||     
T  1394976 tttttaagtgtcgttttagaatattcacatcaaattagtgaagtgtattttttcacattttctttctatcataccctcattttaatccaccaatatattc 1394877  T
Q  290 ctannnnnnngcacacactttctcttttcaataaatttaatattttatctttct 343  Q
    |||        | |||||||||| ||| ||||||||||||||| ||| ||||||    
T  1394876 ctattttttt-cgcacactttctttttccaataaatttaatatgttaactttct 1394824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 366
Target Start/End: Original strand, 1453955 - 1454064
Alignment:
Q  257 attatactcttattttaatccattaatatatttctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaaca 356  Q
    ||||||| ||||||||||||||| |||| |||||||       ||||| |  |||||||||||||||||||||||  |||| ||||||||  || |||||    
T  1453955 attatacccttattttaatccatcaatagatttctattttcttgcacatatattctcttttcaataaatttaataagttatttttctctcacaacaaaca 1454054  T
Q  357 attgttagtt 366  Q
     |||||||||    
T  1454055 gttgttagtt 1454064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 43021558 - 43021479
Alignment:
Q  209 aatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatatt 288  Q
    ||||| |||| ||||||| ||||||| |||||||||||||||| |  |||||||| |||| |||||||||  ||||||||    
T  43021558 aatattaacaccaaattaacgaaatggatttttgcacatttactttctattatacccttagtttaatccaccaatatatt 43021479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 36319550 - 36319611
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgt 361  Q
    |||||||| || ||||| ||||||||||||||| |||| ||| |||||||| ||||||||||    
T  36319550 gcacacaccttatctttccaataaatttaatatgttatatttatctcgtaacaaacaattgt 36319611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 356
Target Start/End: Complemental strand, 52415661 - 52415605
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaaca 356  Q
    ||||||||||| ||||| ||||||||||||||| |||| ||| |||||||| |||||    
T  52415661 gcacacactttttctttccaataaatttaatatgttatatttttctcgtaacaaaca 52415605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 39157314 - 39157260
Alignment:
Q  343 tctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    |||| ||| ||||||||||||||||||||  ||||||| |||||||| |||||||    
T  39157314 tctcataacaaacaattgttagttactatcattttctccaacaaatttttatttt 39157260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 36319484 - 36319529
Alignment:
Q  233 tgtatttttgcacatttacctcatattatactcttattttaatcca 278  Q
    ||||||||||||||||| | || ||||||||||| |||||||||||    
T  36319484 tgtatttttgcacattttcttcctattatactctcattttaatcca 36319529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 197 - 390
Target Start/End: Original strand, 5604 - 5798
Alignment:
Q  197 gtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatatttctannnn 296  Q
    ||||| ||||||||||| ||||||||| |||| || ||||||||||||||||| | ||  |||||||  | |||||||| || ||||||||| |||        
T  5604 gtgtcattttgaaatattaacatcaaaatagcaaagtgtatttttgcacattttcttccaattataccatcattttaattcactaatatattcctaattt 5703  T
Q  297 nnn-gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattc 390  Q
        ||||||||||||||||||||||||||||||||| |||| ||||||| |||| ||||| |||||||||||||| |||||||| |||||||||    
T  5704 ttttgcacacactttctcttttcaataaatttaatatgttatttttctcttgtaacaaacatttgttagttactatctttttctccaacaaattc 5798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 181 - 397
Target Start/End: Original strand, 4700652 - 4700871
Alignment:
Q  181 ctatattcttttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattata----ctcttattttaatc 276  Q
    |||| ||||||||||| |||||||||||||||| |||||||||||| |||| ||||||||||||| ||||| ||  |||| |    |  |||||||||||    
T  4700652 ctatgttcttttttaactgtcgttttgaaatattaacatcaaattaacgaagtgtatttttgcacctttacttccaattacatagaccgttattttaatc 4700751  T
Q  277 cattaatatatttctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttt 376  Q
    ||  ||||||||  ||        |||||||||||||||| |||||| |||||||| |||||||||| |||||| ||| |||||||||||| ||| ||||    
T  4700752 caccaatatattcatatttttttacacacactttctctttacaataa-tttaatatgttatctttctttcgtaacaaataattgttagttagtatctttt 4700850  T
Q  377 tctctaacaaattcttatttt 397  Q
    |||| ||||||||||||||||    
T  4700851 tctccaacaaattcttatttt 4700871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 185 - 390
Target Start/End: Complemental strand, 11084522 - 11084317
Alignment:
Q  185 attcttttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaata 284  Q
    |||| |||||||||||| ||||| ||||| ||||||||| |||  || ||| |||||  |||||| | || |||||||| || ||||||||| |  ||||    
T  11084522 attcctttttaagtgtcattttggaatattaacatcaaaatagtaaagtgtgtttttatacattttcttcctattataccctcattttaatctaccaata 11084423  T
Q  285 tatttctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaac 384  Q
    ||||  ||       ||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||| ||| ||| |||||||| |||    
T  11084422 tattcatattattttgcacacactttctctttccaataaatttaatatgttatctttctctcgtaacaaacatttgttaattaatatttttttctccaac 11084323  T
Q  385 aaattc 390  Q
    ||||||    
T  11084322 aaattc 11084317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 300 - 397
Target Start/End: Original strand, 16806134 - 16806231
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    ||||||||||| ||||| ||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||| |||||||||||||||||| ||||||    
T  16806134 gcacacactttatctttccaataaatttaatatgttatctttctctcgtaacaaacaattgtcagttattatctttttctctaacaaattcatatttt 16806231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 300 - 397
Target Start/End: Original strand, 16845415 - 16845512
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    ||||||||||| ||||| ||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||| |||||||||||||||||| ||||||    
T  16845415 gcacacactttatctttccaataaatttaatatgttatctttctctcgtaacaaacaattgtcagttattatctttttctctaacaaattcatatttt 16845512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 190 - 397
Target Start/End: Original strand, 42871903 - 42872106
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatattt 289  Q
    |||||||||||||||||  ||||  ||||||||| ||||||| |||||||||||| |||| | || ||| |||| || |||||||||||  ||||||||     
T  42871903 tttttaagtgtcgttttagaatactaacatcaaaatagcgaagtgtatttttgcatattttcttcctatcataccctcattttaatccaccaatatattc 42872002  T
Q  290 ctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaatt 389  Q
    |||       |  |||||||||||  |  |||||||||||||| |||| |||||||||||| ||||| |||||||||||||| |||||||  ||||||||    
T  42872003 ctattattttg--cacactttctcactctaataaatttaatatgttat-tttctctcgtaacaaacatttgttagttactat-tttttcttcaacaaatt 42872098  T
Q  390 cttatttt 397  Q
    | ||||||    
T  42872099 cctatttt 42872106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 390
Target Start/End: Original strand, 25713921 - 25714011
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattc 390  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||||| | | | |||||||| |||||||||    
T  25713921 gcacacactttctctttccaataaatttaatatgttatctttctctcgtaacaaacatttgttagtcagtgtgtttttctccaacaaattc 25714011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 190 - 397
Target Start/End: Complemental strand, 15508075 - 15507868
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatattt 289  Q
    |||||||||||||||||   |||| |||  |||| ||||||| ||||||||||| || || | || ||||||||  | |||||||||||  |||||||||    
T  15508075 tttttaagtgtcgttttagtatattaacgccaaaatagcgaattgtatttttgctcactttcttcctattataccttcattttaatccaccaatatattt 15507976  T
Q  290 -ctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaat 388  Q
     |||       ||| |||||| || ||||| || |||||||||| |||||||||| || ||| ||||| |||||||||||||| |||||||| ||| |||    
T  15507975 tctatttttttgcatacacttcct-ttttccattaatttaatatgttatctttctgtcttaacaaacatttgttagttactatgtttttctccaactaat 15507877  T
Q  389 tcttatttt 397  Q
    |||||||||    
T  15507876 tcttatttt 15507868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 390
Target Start/End: Complemental strand, 44898688 - 44898602
Alignment:
Q  304 acactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattc 390  Q
    |||||||| ||||| |||||||||||||| |||| |||||||||||| |||||||||||||||||| | | |||||| | |||||||    
T  44898688 acactttccctttttaataaatttaatatattatttttctctcgtaacaaacaattgttagttactttctctttctccaccaaattc 44898602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 192 - 390
Target Start/End: Original strand, 20170915 - 20171107
Alignment:
Q  192 tttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatatttct 291  Q
    |||||||||||||||  ||||| |||||  || ||||||| ||||||||||||||||| | || |||||||| || |||||||||||  |||||||| ||    
T  20170915 tttaagtgtcgttttagaatattaacattgaaatagcgaagtgtatttttgcacattttcttcctattataccctcattttaatccaccaatatattcct 20171014  T
Q  292 annnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattc 390  Q
    |       | |||||||||   |||   |||| ||| || | ||||||||||||||||| |||||  | ||||||||||| |||||||| |||||||||    
T  20171015 atttttttgtacacacttt---ttt---ataattttcatttgttatctttctctcgtaacaaacatgtattagttactatctttttctccaacaaattc 20171107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 300 - 363
Target Start/End: Complemental strand, 21253091 - 21253028
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgtta 363  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||| |||| ||||||||||||    
T  21253091 gcacacactttatcttttcaataaatttaatatgttatttttctctagtaacaaacaattgtta 21253028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 361
Target Start/End: Original strand, 29408442 - 29408499
Alignment:
Q  304 acactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgt 361  Q
    ||||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||||||    
T  29408442 acactttatcttttcaataaatttaatatgttatctttctctcataacaaacaattgt 29408499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 364
Target Start/End: Complemental strand, 41541792 - 41541618
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatattt 289  Q
    ||||||| ||| |||||  ||||| |||| |||| || | || |||| ||||||| |||| | || |||||||| ||||||||||||||  ||||||||     
T  41541792 tttttaattgttgttttagaatattaacaccaaaataacaaagtgtacttttgcatattttcttcctattatacccttattttaatccaccaatatattc 41541693  T
Q  290 ctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttag 364  Q
     ||        |||||||||||||||| ||||||||||||||| |||| ||||||  |||| ||||| |||||||    
T  41541692 ttattctttttcacacactttctctttccaataaatttaatatgttatttttctcctgtaacaaacatttgttag 41541618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 190 - 397
Target Start/End: Complemental strand, 4317238 - 4317027
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatatt- 288  Q
    |||||||||||| ||||| | ||| | ||||||||||||||| |||||||||  |||||| | |  |||||||  ||||||||||||||  |||| |||     
T  4317238 tttttaagtgtcattttggactattagcatcaaattagcgaagtgtatttttctacattttctttctattatatccttattttaatccaccaataaattc 4317139  T
Q  289 --tctannnnnnngcacacactttctcttttcaataaatttaatat-tttatctttctctcgtaataaacaattgttagttactatatttttctctaaca 385  Q
      | |        |||||  |||||| ||||| ||||||||||||  |||||||||||||| ||| |||||||||||| ||||||| | |||||| ||||    
T  4317138 ttttttttttttcgcacaagctttcttttttccataaatttaatacatttatctttctctcataacaaacaattgttaattactatctctttctcaaaca 4317039  T
Q  386 aattcttatttt 397  Q
    ||| | ||||||    
T  4317038 aatacctatttt 4317027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 361
Target Start/End: Original strand, 3309451 - 3309578
Alignment:
Q  233 tgtatttttgcacatttacctcatattatactcttattttaatccattaatatatttctannnnnnngcacacactttctcttttcaataaatttaatat 332  Q
    ||||||||||||||||| | || |||||||| || |||||||| ||| |||| ||| |||       ||||||| ||| | |||||||| ||||||||||    
T  3309451 tgtatttttgcacattttcttcctattataccctcattttaattcatcaataaattcctacttttt-gcacacattttatattttcaatcaatttaatat 3309549  T
Q  333 tttatctttctctcgtaataaacaattgt 361  Q
     ||||||||||||| ||| ||||||||||    
T  3309550 gttatctttctctcttaacaaacaattgt 3309578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 386
Target Start/End: Original strand, 36243626 - 36243708
Alignment:
Q  304 acactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaa 386  Q
    ||||||||||||| ||||||||||||||| |||||||||| || ||| ||||| ||||| ||  |||| |||||||| |||||    
T  36243626 acactttctctttccaataaatttaatatgttatctttctttcataacaaacatttgttggtagctatctttttctccaacaa 36243708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 288
Target Start/End: Complemental strand, 43043372 - 43043277
Alignment:
Q  192 tttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatatt 288  Q
    |||||||||||||||||||||| |||| |   |||| ||| ||||||||||||||||||  |  |||||||||||||||| |||||||  |||||||    
T  43043372 tttaagtgtcgttttgaaatattaacaccgctttag-gaagtgtatttttgcacatttattttctattatactcttatttcaatccatcgatatatt 43043277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 397
Target Start/End: Original strand, 45272930 - 45273005
Alignment:
Q  322 aaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    ||||||||||| |||| |||||||||||| || ||||||| ||||| ||| |||||||| | ||||||| ||||||    
T  45272930 aaatttaatatgttatatttctctcgtaacaagcaattgtcagttattatctttttctccatcaaattcctatttt 45273005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 331
Target Start/End: Complemental strand, 12413085 - 12412943
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatattt 289  Q
    |||||||||||||||||  ||| | ||||  |||  |||||| |||||||||||||| ||   || |||||||| || |||||||||||||||||  |||    
T  12413085 tttttaagtgtcgttttagaattttaacacaaaaaaagcgaagtgtatttttgcacacttttttcctattataccctcattttaatccattaatagtttt 12412986  T
Q  290 ct-annnnnnngcacacactttctcttttcaataaatttaata 331  Q
    || |       ||||||||||| ||||| ||||||||||||||    
T  12412985 ctaatttttttgcacacactttatctttccaataaatttaata 12412943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 331
Target Start/End: Complemental strand, 12425145 - 12425003
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatattt 289  Q
    |||||||||||||||||  ||| | ||||  |||  |||||| |||||||||||||| ||   || |||||||| || |||||||||||||||||  |||    
T  12425145 tttttaagtgtcgttttagaattttaacacaaaaaaagcgaagtgtatttttgcacacttttttcctattataccctcattttaatccattaatagtttt 12425046  T
Q  290 ct-annnnnnngcacacactttctcttttcaataaatttaata 331  Q
    || |       ||||||||||| ||||| ||||||||||||||    
T  12425045 ctaatttttttgcacacactttatctttccaataaatttaata 12425003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 332
Target Start/End: Original strand, 34424377 - 34424519
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatattt 289  Q
    ||||||||||||||||| |||| | ||||  ||| ||||||| ||||||||| |||| ||   |  |||||||| |||||||||||||| | |||  ||     
T  34424377 tttttaagtgtcgttttaaaattttaacacaaaaatagcgaagtgtatttttacacactttttttctattatacccttattttaatccactgataatttc 34424476  T
Q  290 ctannnnnnngcacacactttctcttttcaataaatttaatat 332  Q
    |||       ||||||||||| ||||| |||||||||||||||    
T  34424477 ctatttctttgcacacactttatctttccaataaatttaatat 34424519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 390
Target Start/End: Original strand, 149973 - 150040
Alignment:
Q  323 aatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattc 390  Q
    ||||||||||  || |||||||| |||| |||||||||||||||| ||| |||| ||| |||||||||    
T  149973 aatttaatatgctagctttctcttgtaacaaacaattgttagttattatcttttactccaacaaattc 150040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 359
Target Start/End: Complemental strand, 1398075 - 1397936
Alignment:
Q  215 aacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatatttctannnnnnngcacacactttctct 314  Q
    |||| |||| ||||||  ||||||||||||||||| | ||  ||||||| || |||||||||||  |||| ||| |||        |||||||||| |||    
T  1398075 aacaccaaaatagcgatgtgtatttttgcacattttcttccaattataccctcattttaatccaccaataaattcctatct-----cacacactttatct 1397981  T
Q  315 tttcaataaatttaatattttatctttctctcgtaataaacaatt 359  Q
    || ||||||||||||||| |||| |||||| ||||| ||| ||||    
T  1397980 ttccaataaatttaatatgttatgtttctcccgtaacaaaaaatt 1397936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 385
Target Start/End: Original strand, 25713605 - 25713688
Alignment:
Q  302 acacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaaca 385  Q
    ||||||||||||||| |||||| ||||| || |||| |||||| | ||| ||||| |||||||||| | | |||||||| ||||    
T  25713605 acacactttctctttccaataattttaacatgttatttttctcacataacaaacatttgttagttattgtgtttttctccaaca 25713688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 369
Target Start/End: Original strand, 1405825 - 1405890
Alignment:
Q  303 cacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttact 369  Q
    |||||||||||| ||||||||||||||| | |||| ||| |||| ||| ||||| ||||||||||||    
T  1405825 cacactttctctgttcaataaatttaatgtgttat-tttttctcataagaaacatttgttagttact 1405890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 1769840 - 1769884
Alignment:
Q  325 tttaatattttatctttctctcgtaataaacaattgttagttact 369  Q
    ||||| || |||| |||||||||||| ||||||||||||||||||    
T  1769840 tttaacatattatttttctctcgtaacaaacaattgttagttact 1769884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 208 - 390
Target Start/End: Complemental strand, 14897176 - 14896994
Alignment:
Q  208 aaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatatttctannnnnnngcacacac 307  Q
    |||||| |||||||||  |||||| ||||||||||||||||| | |  |||||| | || |||||||||||  ||||||||  ||       |||||| |    
T  14897176 aaatattaacatcaaaagagcgaagtgtatttttgcacattttctttctattatgccctcattttaatccaccaatatattcttattttcttgcacacgc 14897077  T
Q  308 tttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattc 390  Q
    ||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||||| |||| |||||||| || ||||||    
T  14897076 tttctcttttcaataaatttaatatgttatatttctctcgtaacaaacatttgttagttcctatctttttctccaaaaaattc 14896994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 300 - 395
Target Start/End: Complemental strand, 27232186 - 27232091
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatt 395  Q
    ||||||| ||| |||||  |||||||||||||| ||||||||||||||||| |||||||||| ||||| ||| |||||||| ||||||||||||||    
T  27232186 gcacacattttatctttcaaataaatttaatatgttatctttctctcgtaacaaacaattgtcagttattatctttttctccaacaaattcttatt 27232091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 390
Target Start/End: Complemental strand, 34039390 - 34039300
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattc 390  Q
    ||||||| ||||||||| |||||| |||||||| ||||||||||||| ||| ||| | ||||||||||||||||||||||| |||||||||    
T  34039390 gcacacattttctctttccaataagtttaatatattatctttctctcataacaaatatttgttagttactatatttttctccaacaaattc 34039300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 303 - 389
Target Start/End: Complemental strand, 32234198 - 32234112
Alignment:
Q  303 cacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaatt 389  Q
    |||||||| | |||| |||||||||||||| |||| |||||||||||| |||||||||||||||  ||| |||||||||||||||||    
T  32234198 cacactttatttttttaataaatttaatatgttatttttctctcgtaacaaacaattgttagtttttatctttttctctaacaaatt 32234112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 304 - 397
Target Start/End: Original strand, 30887514 - 30887607
Alignment:
Q  304 acactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    ||||||| |||||| |||||||||||||| | || |||||||| ||| ||||| |||||||||||||| |||||||| ||||||||||| ||||    
T  30887514 acactttatctttttaataaatttaatatgtaatttttctctcctaacaaacatttgttagttactatctttttctccaacaaattcttttttt 30887607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 190 - 390
Target Start/End: Complemental strand, 5871461 - 5871261
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatattt 289  Q
    |||||||||||| |||| ||| || || |||||||||||||  | ||||||| ||||||| | || ||||||||  | |||||||||||  |||| |||     
T  5871461 tttttaagtgtctttttaaaaaattaatatcaaattagcgatgtatatttttacacattttcttcctattataccttcattttaatccaccaataaattc 5871362  T
Q  290 ctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaatt 389  Q
    |||       ||||||| ||| | ||| |||| |||||||||| |||| ||||||| |||| |||||||||| | ||| ||| |||||||| ||||||||    
T  5871361 ctattttttcgcacacattttatttttccaatgaatttaatatgttatttttctcttgtaacaaacaattgtcaattattatttttttctccaacaaatt 5871262  T
Q  390 c 390  Q
    |    
T  5871261 c 5871261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 300 - 367
Target Start/End: Original strand, 7695004 - 7695071
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagtta 367  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||| |||| |||||||||| |||||    
T  7695004 gcacacactttatcttttcaataaatttaatatgttatctttctcttgtaacaaacaattgtcagtta 7695071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 11087663 - 11087585
Alignment:
Q  312 tcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattc 390  Q
    |||||| ||||||||||| || ||||||||||||  ||| |||||||||| ||||||||| |||||||| |||||||||    
T  11087663 tctttttaataaatttaacatgttatctttctcttataacaaacaattgtcagttactatctttttctccaacaaattc 11087585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 389
Target Start/End: Complemental strand, 34146781 - 34146692
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaatt 389  Q
    ||||||| ||| ||||| ||||||||||||||| |||||||||| ||| || ||||||||||  |||| ||| |||||||| ||||||||    
T  34146781 gcacacattttatctttccaataaatttaatatgttatctttctttcgcaacaaacaattgtctgttattatctttttctccaacaaatt 34146692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 361
Target Start/End: Original strand, 1530314 - 1530374
Alignment:
Q  301 cacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgt 361  Q
    |||||| ||| ||||||||||||||||||||| |||||||||| |||||| ||||||||||    
T  1530314 cacacattttatcttttcaataaatttaatatgttatctttctttcgtaacaaacaattgt 1530374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 350
Target Start/End: Original strand, 29315232 - 29315396
Alignment:
Q  186 ttcttttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatat 285  Q
    |||||||||||||||||||||  || ||   ||| ||| |||| || ||||| ||||||||||| | || |||||||| || | |||||||||  |||||    
T  29315232 ttcttttttaagtgtcgttttagaaaatttccatgaaaatagcaaagtgtatatttgcacattttcttcctattataccctcaatttaatccaccaatat 29315331  T
Q  286 atttctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaa 350  Q
    || | ||       ||||| ||||| ||||||||||||||||||||| |||| ||| ||||||||    
T  29315332 atatttattttttggcacatactttatcttttcaataaatttaatatgttatatttttctcgtaa 29315396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 376
Target Start/End: Complemental strand, 35970553 - 35970481
Alignment:
Q  303 cacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttt 376  Q
    |||||||||| |||| |||||||||||||| ||||||||||||| ||| ||| | |||||||||||||| ||||    
T  35970553 cacactttctttttt-aataaatttaatatgttatctttctctcataacaaatatttgttagttactatctttt 35970481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 389
Target Start/End: Complemental strand, 38402048 - 38401960
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaatt 389  Q
    ||||||||||| ||||| ||||||| ||||||| ||||| ||||||| ||| ||||||||| | |||| ||| |||||||| ||||||||    
T  38402048 gcacacactttatctttccaataaacttaatatgttatcattctctcataacaaacaattg-tcgttattatctttttctccaacaaatt 38401960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 346
Target Start/End: Original strand, 35970077 - 35970232
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatattt 289  Q
    ||||||| | |||||||  ||||| |||| ||||||||| || ||||||||||||||||| | || ||| |||| ||  ||||||||||  ||||||||     
T  35970077 tttttaactatcgttttagaatattaacaccaaattagcaaagtgtatttttgcacattttcttcctatcataccctcgttttaatccaccaatatattc 35970176  T
Q  290 ctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctc 346  Q
    |||        ||||| |||||| ||| ||||||||||||||| ||||| |||||||    
T  35970177 ctattttttt-cacacgctttctttttccaataaatttaatatgttatcattctctc 35970232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 367
Target Start/End: Original strand, 43026167 - 43026229
Alignment:
Q  304 acactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagtta 367  Q
    ||||||||| ||||||  ||||||||||  |||||||||||| |||| ||||||||||||||||    
T  43026167 acactttct-ttttcacgaaatttaatacattatctttctctagtaaaaaacaattgttagtta 43026229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 188 - 390
Target Start/End: Complemental strand, 1405506 - 1405301
Alignment:
Q  188 cttttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatat 287  Q
    |||||| ||||||  ||||| ||||| |||| |||||||  ||| ||||||||||||| ||||| || |||||||| |||||||||||||| ||||| ||    
T  1405506 ctttttaaagtgttattttggaatattaacaccaaattaatgaagtgtatttttgcacttttacttcctattatacccttattttaatccactaataaat 1405407  T
Q  288 ttctannnnnnng----cacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaa 383  Q
    | ||             |||||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||| | |||||||| ||    
T  1405406 tgctttttttttttcttcacacactatctctttccaataaatttaatatgttatctttctctcgtaacaaacaattgttagttact-tctttttctccaa 1405308  T
Q  384 caaattc 390  Q
    |||||||    
T  1405307 caaattc 1405301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 190 - 390
Target Start/End: Complemental strand, 297070 - 296870
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatattt 289  Q
    |||||||||||||||||  ||||| |||| |||| ||||||| |||||||||| |||||| | || || ||||| || ||||||  |||  |||||||||    
T  297070 tttttaagtgtcgttttagaatattaacaccaaaatagcgaagtgtatttttgtacattttcttcctactataccctcattttataccaccaatatattt 296971  T
Q  290 ctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaatt 389  Q
    |||       |||||||||||||||||||||| |||||||||   |||||||| ||| ||| ||||| |||||||||||||| |||||  | ||||||||    
T  296970 ctatttttttgcacacactttctcttttcaattaatttaatacggtatctttcgctcataacaaacatttgttagttactatcttttttaccaacaaatt 296871  T
Q  390 c 390  Q
    |    
T  296870 c 296870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 300 - 397
Target Start/End: Complemental strand, 45667945 - 45667848
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||  ||||| |||||||||| ||||| |||||||||||| ||||||||| ||||||    
T  45667945 gcacacactttatcttttcaataaatttaatatgttatctttcttccgtaacaaacaattgtcagttattatatttttctccaacaaattcctatttt 45667848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 233 - 380
Target Start/End: Complemental strand, 2094345 - 2094198
Alignment:
Q  233 tgtatttttgcacatttacctcatattatactcttattttaatccattaatatatttctannnnnnngcacacactttctcttttcaataaatttaatat 332  Q
    ||||||||||||||||| | || |||||||||||   |||||||||  |||| |||||||       | ||||||||| ||||||||| |||||||||||    
T  2094345 tgtatttttgcacattttcttcctattatactctcggtttaatccaccaataaatttctatttttttggacacactttatcttttcaaaaaatttaatat 2094246  T
Q  333 tttatctttctctcgtaataaacaattgttagttactatatttttctc 380  Q
     ||||||||||||||||| ||| |||||| ||||| ||| ||||||||    
T  2094245 gttatctttctctcgtaacaaataattgtcagttattatctttttctc 2094198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 300 - 397
Target Start/End: Complemental strand, 45647104 - 45647007
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    ||||||||||| ||||| ||||||||||||||| ||||||||||||| ||| |||||||||| | ||| ||| |||||||| ||||||||| ||||||    
T  45647104 gcacacactttatctttccaataaatttaatatgttatctttctctcataacaaacaattgtcacttattatctttttctccaacaaattcctatttt 45647007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 190 - 393
Target Start/End: Complemental strand, 2599678 - 2599475
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatattt 289  Q
    |||||||||||| ||||  || || ||||  ||| ||||||  |||||||||||||||||   || |||||||| || |||||||||||  |||| |||     
T  2599678 tttttaagtgtctttttagaaaattaacactaaaatagcgatgtgtatttttgcacattttattcctattataccctcattttaatccaccaataaattc 2599579  T
Q  290 ctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaatt 389  Q
     ||       ||| || |||| ||||| ||||||||||||||| ||||||||||||||||| |||| ||||| ||||| ||| |||||| | ||||||||    
T  2599578 atacttttttgcagactctttatctttccaataaatttaatatgttatctttctctcgtaacaaaccattgtcagttattatctttttcaccaacaaatt 2599479  T
Q  390 ctta 393  Q
    ||||    
T  2599478 ctta 2599475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 190 - 397
Target Start/End: Original strand, 16236991 - 16237198
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatattt 289  Q
    |||||||||||| ||||  || || ||||  ||| ||||||  ||||||||| ||||||| | || |||||||| || |||||||||||| |||| |||     
T  16236991 tttttaagtgtctttttagaaaattaacacaaaaatagcgatgtgtattttttcacattttcttcctattataccctcattttaatccataaataaattc 16237090  T
Q  290 ctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaatt 389  Q
    |||       ||||||||||| ||| | |||||||||||| || |||| |||||||||||| |||||| ||| ||||| ||| |||||||  ||| ||||    
T  16237091 ctattttcttgcacacactttatctctccaataaatttaaaatgttatttttctctcgtaacaaacaactgtcagttattatctttttcttcaaccaatt 16237190  T
Q  390 cttatttt 397  Q
    | ||||||    
T  16237191 catatttt 16237198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 268 - 385
Target Start/End: Complemental strand, 376255 - 376138
Alignment:
Q  268 attttaatccattaatatatttctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagtta 367  Q
    |||||||||||| ||||||||| ||       ||||||||||||||||| ||| ||||||||||| |||||||||||| |||| ||||| ||||| ||||    
T  376255 attttaatccatcaatatatttttatttttttgcacacactttctctttccaacaaatttaatatgttatctttctctggtaacaaacatttgttggtta 376156  T
Q  368 ctatatttttctctaaca 385  Q
    ||||  ||||||| ||||    
T  376155 ctatccttttctccaaca 376138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 397
Target Start/End: Complemental strand, 6749435 - 6749355
Alignment:
Q  317 tcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    |||||||||||||||| |||| ||||||| |||| |||||||| ||||||||||| | |||||| ||||||||| ||||||    
T  6749435 tcaataaatttaatatgttatttttctcttgtaacaaacaatttttagttactatctctttctccaacaaattcctatttt 6749355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 301 - 370
Target Start/End: Original strand, 633144 - 633213
Alignment:
Q  301 cacacactttctcttttc-aataaatttaatattttatctttctctcgtaataaacaattgttagttacta 370  Q
    |||||||||| ||||||| |||||||||||||| ||||||||||||||||||||| |||| ||||||||||    
T  633144 cacacacttt-tcttttctaataaatttaatatgttatctttctctcgtaataaataatttttagttacta 633213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 393
Target Start/End: Original strand, 22722256 - 22722349
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattctta 393  Q
    ||||||||||| ||||| ||||||||||||| | ||||| ||||||| |||   |||||||||||||||| | |||||||  ||||||||||||    
T  22722256 gcacacactttttctttccaataaatttaatgtgttatcattctctcataacttacaattgttagttactctctttttcttcaacaaattctta 22722349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 343
Target Start/End: Complemental strand, 34669303 - 34669145
Alignment:
Q  186 ttcttttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctca-tattatactcttattttaatccattaata 284  Q
    |||||||||||||||  ||||| || || ||||| ||| ||||||  |||||||||||||||||   |   ||||||||||| |||||||||||| ||||    
T  34669303 ttcttttttaagtgtttttttggaaaattaacattaaaatagcgatgtgtatttttgcacatttttttttctattatactctcattttaatccatcaata 34669204  T
Q  285 tatttctannnnnnngcacacactttctcttttcaataaatttaatattttatctttct 343  Q
     |||||||       ||| ||||||| | |||||||||||||||||||  |||||||||    
T  34669203 aatttctacttttttgcagacactttattttttcaataaatttaatatgatatctttct 34669145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 400
Target Start/End: Complemental strand, 39493162 - 39493062
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttattttct 399  Q
    |||||||| || |||||  |||||||||||| | |||||||||| || |||||||||||| ||||||||| | | |||||| ||||||||  ||||||||    
T  39493162 gcacacacattttctttctaataaatttaatgtattatctttctttcataataaacaattattagttactctctctttctccaacaaatttctattttct 39493063  T
Q  400 t 400  Q
    |    
T  39493062 t 39493062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 190 - 356
Target Start/End: Complemental strand, 9589380 - 9589211
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatat-- 287  Q
    |||||||||||| ||||  ||||| |||| |||| |||| || ||||||||||||| ||| | || |||| ||| || |||||||||||  |||||||      
T  9589380 tttttaagtgtcattttagaatattaacaccaaaatagcaaagtgtatttttgcactttttcttcctattgtaccctcattttaatccaccaatatatac 9589281  T
Q  288 -ttctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaaca 356  Q
     ||||        ||||| ||||||||||||||||||||||||||| |||| ||| ||| |||| |||||    
T  9589280 cttctttttttttgcacaaactttctcttttcaataaatttaatatgttatttttatcttgtaacaaaca 9589211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 371
Target Start/End: Complemental strand, 12569005 - 12568819
Alignment:
Q  184 tattcttttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaat 283  Q
    |||||||||||||||||  | ||| ||||| |||| |||| ||| ||| ||||||||||||||||| | || |||||||| |    |||||||||| |||    
T  12569005 tattcttttttaagtgttctgttggaatattaacaccaaaatagtgaagtgtatttttgcacattttcttcttattataccc----tttaatccatgaat 12568910  T
Q  284 atatttctannnnnnngcacacactttctcttttc---aataaatttaatattttatctttctctcgtaataaacaattgttagttactat 371  Q
    ||||||| |        ||||  |||| ||||| |   |||||||||||||| |||| ||| |||||||| ||||| ||||||||||||||    
T  12568909 atatttccatttttttacacaagctttttctttccaataataaatttaatatattatatttatctcgtaacaaacatttgttagttactat 12568819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 371
Target Start/End: Complemental strand, 13545469 - 13545283
Alignment:
Q  184 tattcttttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaat 283  Q
    |||||||||||||||||  | ||| ||||| |||| |||| ||| ||| ||||||||||||||||| | || |||||||| |    |||||||||| |||    
T  13545469 tattcttttttaagtgttctgttggaatattaacaccaaaatagtgaagtgtatttttgcacattttcttcttattataccc----tttaatccatgaat 13545374  T
Q  284 atatttctannnnnnngcacacactttctcttttc---aataaatttaatattttatctttctctcgtaataaacaattgttagttactat 371  Q
    ||||||| |        ||||  |||| ||||| |   |||||||||||||| |||| ||| |||||||| ||||| ||||||||||||||    
T  13545373 atatttccatttttttacacaagctttttctttccaataataaatttaatatattatatttatctcgtaacaaacatttgttagttactat 13545283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 397
Target Start/End: Complemental strand, 5494129 - 5494034
Alignment:
Q  303 cacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttacta-tatttttctctaacaaattcttatttt 397  Q
    |||||||| |||||  |||||||||||||| |||||||| |||||||| |||||||||| | ||| || | |||||||| || |||||| ||||||    
T  5494129 cacactttatctttataataaatttaatatgttatctttttctcgtaacaaacaattgtcacttattattttttttctccaataaattcctatttt 5494034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 397
Target Start/End: Original strand, 388922 - 389016
Alignment:
Q  303 cacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    ||||| ||||||||  ||||||||| |  | |||||||||||| |||| ||||||||||||||||||||  || ||||  |||||||| ||||||    
T  388922 cacacattctctttctaataaatttgacgtgttatctttctcttgtaacaaacaattgttagttactatccttctctcatacaaattcctatttt 389016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 350
Target Start/End: Original strand, 38750456 - 38750615
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatattt 289  Q
    |||||||||||||||||  || ||   ||| ||| |||| || ||||||||||||||||| | || ||||||||||| | |||||||||  ||||||| |    
T  38750456 tttttaagtgtcgttttagaaaattttcatgaaaatagcaaagtgtatttttgcacattttcttcctattatactctcaatttaatccaccaatatatct 38750555  T
Q  290 ctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaa 350  Q
     ||       ||||||||||| ||||| ||||||||||||||| ||||  || ||||||||    
T  38750556 tta-tttttggcacacactttatctttccaataaatttaatatgttataattttctcgtaa 38750615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 369
Target Start/End: Complemental strand, 23272542 - 23272481
Alignment:
Q  308 tttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttact 369  Q
    ||||| ||||||||||||||||| |  |||||||||||| ||| |||||||||||| |||||    
T  23272542 tttcttttttcaataaatttaatgtgctatctttctctcctaacaaacaattgttaattact 23272481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 21916070 - 21916015
Alignment:
Q  301 cacacactttctcttttcaataaatttaatattttatctttctctcgtaataaaca 356  Q
    |||||||||| ||||| |||||||||||||||||||| ||| ||| |||| |||||    
T  21916070 cacacactttatctttccaataaatttaatattttatatttttcttgtaacaaaca 21916015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 34824316 - 34824257
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacattt 249  Q
    |||||||||||||||||  |||||  ||| |||||||| ||| |||||||||||||||||    
T  34824316 tttttaagtgtcgttttagaatattcacaccaaattagtgaagtgtatttttgcacattt 34824257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 377
Target Start/End: Original strand, 42735062 - 42735205
Alignment:
Q  233 tgtatttttgcacatttacctcatattatactcttattttaatccattaatatatttctannnnnnngcacacactttctcttttcaataaatttaatat 332  Q
    |||||||||| |||||| | |  ||||||| || ||||||||||||| |||| ||| |||       ||| ||||||| ||||||  |||||||||||||    
T  42735062 tgtatttttgtacattttcgttctattata-tcctattttaatccatcaataaattcctatttttttgcatacactttatctttttgataaatttaatat 42735160  T
Q  333 tttatctttctctcgtaataaacaattgttagttactatattttt 377  Q
     |||| ||| |||||||| |||||| | ||||||| ||| |||||    
T  42735161 gttatttttttctcgtaacaaacaaattttagttattattttttt 42735205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 284
Target Start/End: Original strand, 21959319 - 21959417
Alignment:
Q  186 ttcttttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaata 284  Q
    ||||||||||||||||||||| |||| | ||||| ||| || |||| ||| ||||||||||  |   || |||||||| || ||||||||||| |||||    
T  21959319 ttcttttttaagtgtcgttttaaaattttaacataaaaataacgaagtgtctttttgcacacctttttcctattataccctcattttaatccactaata 21959417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 397
Target Start/End: Original strand, 6472366 - 6472444
Alignment:
Q  317 tcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    |||||||||||||| ||  || ||||||| |||| |||||||| ||||||||||| | |||||| || |||||| ||||||    
T  6472366 tcaataaatttaatgtt--atttttctcttgtaacaaacaatttttagttactatctctttctccaataaattcctatttt 6472444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 19229368 - 19229413
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctct 345  Q
    ||||| ||||||||||| ||||||||||||||| |||| |||||||    
T  19229368 gcacagactttctctttccaataaatttaatatgttatttttctct 19229413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 45759172 - 45759216
Alignment:
Q  301 cacacactttctcttttcaataaatttaatattttatctttctct 345  Q
    |||||||||| | ||||| ||||||||||||| ||||||||||||    
T  45759172 cacacactttattttttccataaatttaatatgttatctttctct 45759216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 185 - 390
Target Start/End: Original strand, 8544124 - 8544329
Alignment:
Q  185 attcttttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaata 284  Q
    ||||||||||||||| | |||  ||| || |||| ||||||| | |  ||||||||||||||||| | ||||||||||| || |||||||||||  ||||    
T  8544124 attcttttttaagtgccttttcaaaaaattaacaccaaattaacaatgtgtatttttgcacattttcttcatattataccctcattttaatccaccaata 8544223  T
Q  285 tatttctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaac 384  Q
     ||| ||        |||||||| || | ||| ||||||||||||||| ||||||||||||||||| |||||||||| | ||| ||| |||||||| |||    
T  8544224 aattcctgattttttgcacacaccttatatttccaataaatttaatatgttatctttctctcgtaagaaacaattgtcaattattatctttttctccaac 8544323  T
Q  385 aaattc 390  Q
    ||||||    
T  8544324 aaattc 8544329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 314 - 397
Target Start/End: Original strand, 18412892 - 18412975
Alignment:
Q  314 ttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    |||| |||||||||||||| ||||||||||||||||| |||||||||| ||||| ||| ||||||| ||| |||||||||||||    
T  18412892 tttttaataaatttaatatattatctttctctcgtaacaaacaattgtcagttattatctttttctttaaaaaattcttatttt 18412975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 190 - 367
Target Start/End: Original strand, 17201878 - 17202055
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatattt 289  Q
    |||||||||||| ||||  || || ||||| ||| ||||||  ||||||||||||||||| | || |||||||| || |||||||||||  |||| |||     
T  17201878 tttttaagtgtctttttagaaaattaacataaaaatagcgatgtgtatttttgcacattttcttcctattataccctcattttaatccaccaataaattc 17201977  T
Q  290 ctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagtta 367  Q
    |||        |||| ||||| ||||| ||||||||||||||| |||| |||||||||||| |||| ||||| |||||    
T  17201978 ctatttttttacacaaactttatctttccaataaatttaatatgttatttttctctcgtaacaaacgattgtcagtta 17202055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 184 - 369
Target Start/End: Complemental strand, 1584326 - 1584145
Alignment:
Q  184 tattcttttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaat 283  Q
    ||||| |||||||||||| |||| ||| || |||| |||||||||||  ||||||||||||||||| | |  |||||||| || |||||||||||   ||    
T  1584326 tattcctttttaagtgtctttttaaaaaattaacaccaaattagcgatgtgtatttttgcacattttctttctattataccctcattttaatccaccgat 1584227  T
Q  284 atatttctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttact 369  Q
    | |||||||       ||||||||||| ||||| ||||||||||||||  |    |||||||||||| |||||||| | |||||||    
T  1584226 aaatttctatttttctgcacacactttatctttccaataaatttaatacgt----tttctctcgtaacaaacaattttcagttact 1584145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 185 - 361
Target Start/End: Complemental strand, 6428710 - 6428534
Alignment:
Q  185 attcttttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaata 284  Q
    ||||||||||||||||| |||   || || |||| |||| ||| ||  ||||||||||||||||| | |  ||||||||  | |||||||||||  ||||    
T  6428710 attcttttttaagtgtcttttaagaaaattaacaccaaaatagtgatgtgtatttttgcacattttctttctattataccttcattttaatccaccaata 6428611  T
Q  285 tatttctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgt 361  Q
      || |||       ||||||||||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||||    
T  6428610 agttcctatttttttgcacacactttatctttccaataaatttaatatgttatctttctctcgtaacaaacaattgt 6428534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 217 - 389
Target Start/End: Complemental strand, 32474765 - 32474594
Alignment:
Q  217 catcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatatttctannnnnnngcacacactttctcttt 316  Q
    ||||||| ||||||  ||||||||||||||||| | |  |||||||| || |||||||||||  |||| |||  ||       ||| ||||||| |||||    
T  32474765 catcaaaatagcgatttgtatttttgcacattttctttctattataccctcattttaatccaacaataaattcatattttttcgcaaacactttatcttt 32474666  T
Q  317 tcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaatt 389  Q
     ||||||||||||||| |||||||| | ||||||||||||||||| ||||| ||| |||||||  ||||||||    
T  32474665 ccaataaatttaatatgttatcttt-tatcgtaataaacaattgtcagttattatctttttcttcaacaaatt 32474594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 397
Target Start/End: Original strand, 25612841 - 25612919
Alignment:
Q  319 aataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    |||||||||||||| ||||||||||||||||| ||||||| | |||||| ||| |||||||| ||||||||| ||||||    
T  25612841 aataaatttaatatgttatctttctctcgtaagaaacaatcgctagttattatctttttctccaacaaattcctatttt 25612919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 377
Target Start/End: Complemental strand, 17200577 - 17200502
Alignment:
Q  302 acacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatattttt 377  Q
    |||||||||||||||  ||||||| |||||| |||||||||| |||||| ||||| |||||| ||||||| |||||    
T  17200577 acacactttctctttctaataaatataatatgttatctttctttcgtaacaaacatttgttaattactatcttttt 17200502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 397
Target Start/End: Complemental strand, 19804268 - 19804173
Alignment:
Q  302 acacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    ||||||||| ||||| ||| ||||||||||| |||| ||||||| |||| ||| |||||| || || ||| |||||||| ||||||||| ||||||    
T  19804268 acacactttatctttccaacaaatttaatatgttatatttctctggtaacaaataattgtcagctattatctttttctccaacaaattcctatttt 19804173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 302 - 396
Target Start/End: Original strand, 12436247 - 12436341
Alignment:
Q  302 acacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttattt 396  Q
    ||||||||| | ||||||||| ||||||||| |||||||||||| |||| |||| |||||  |||| ||| |||||||  ||||||||| |||||    
T  12436247 acacactttattttttcaatatatttaatatgttatctttctctggtaacaaactattgtcggttattatctttttcttcaacaaattcctattt 12436341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 190 - 332
Target Start/End: Complemental strand, 20202305 - 20202163
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatattt 289  Q
    ||||||||||||||||| |||| | ||||  ||| |||| || |||||||||||||||||   || |||||||| || |||||||| || ||||| ||||    
T  20202305 tttttaagtgtcgttttaaaattttaacacaaaaatagctaagtgtatttttgcacatttttttcctattataccctcattttaattcactaata-attt 20202207  T
Q  290 c-tannnnnnngcacacactttctcttttcaataaatttaatat 332  Q
    | ||       ||||||||||| |||||||||||||||||||||    
T  20202206 catatttttttgcacacactttatcttttcaataaatttaatat 20202163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 28620558 - 28620497
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgt 361  Q
    |||||||| || ||||||||||||||||||||  |||| |||||||||||| ||||||||||    
T  28620558 gcacacaccttatcttttcaataaatttaataagttatatttctctcgtaacaaacaattgt 28620497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 292
Target Start/End: Original strand, 36244519 - 36244596
Alignment:
Q  215 aacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatatttcta 292  Q
    |||| |||||||| ||||| ||||||||||||||| | |  |||||||||||||||||||||||  |||| |||||||    
T  36244519 aacaccaaattagagaaatctatttttgcacattttctttctattatactcttattttaatccaccaataaatttcta 36244596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 389
Target Start/End: Original strand, 42673580 - 42673669
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaatt 389  Q
    ||||||||||| || ||  |||||||||||||| |||| |||||||| ||| ||| ||||||  |||| ||| |||||||||||||||||    
T  42673580 gcacacactttatcattctaataaatttaatatgttatatttctctcataacaaataattgtcggttattatctttttctctaacaaatt 42673669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 284
Target Start/End: Original strand, 39585353 - 39585447
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaata 284  Q
    |||||||||||| ||||  || || |||| |||| ||||||  ||||||||||||||||| | || |||||||| || |||||||||||| ||||    
T  39585353 tttttaagtgtctttttagaaaattaacaccaaaatagcgacgtgtatttttgcacattttcttcctattataccctcattttaatccatcaata 39585447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 387
Target Start/End: Original strand, 39940231 - 39940317
Alignment:
Q  301 cacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaa 387  Q
    |||||||||  ||||| |||||||||||||||||||| |||||||| ||| |||| |||||  |||| ||  |||||||| ||||||    
T  39940231 cacacacttgatctttccaataaatttaatattttatttttctctcataacaaactattgtccgttattaactttttctccaacaaa 39940317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 1584137 - 1584060
Alignment:
Q  186 ttcttttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatac 263  Q
    |||| |||||||| || |||| ||| || ||||||||||||||||  ||||||||||||||||| | || ||||||||    
T  1584137 ttctcttttaagtatctttttaaaaaataaacatcaaattagcgatgtgtatttttgcacattttcttcctattatac 1584060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 369
Target Start/End: Complemental strand, 14967882 - 14967814
Alignment:
Q  301 cacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttact 369  Q
    |||||| ||| |||||  |||||||||||| | |||| |||||||| ||| ||||||||||||||||||    
T  14967882 cacacattttttctttcgaataaatttaatgtgttatttttctctcataacaaacaattgttagttact 14967814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 17203085 - 17203021
Alignment:
Q  334 ttatctttctctcgtaataaa-caattgttagttactatatttttctctaacaaattcttatttt 397  Q
    ||||||||||||| ||| ||| |||||||  |||| |||||||||||||||||||||||| ||||    
T  17203085 ttatctttctctcataacaaatcaattgtccgttattatatttttctctaacaaattcttttttt 17203021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 361
Target Start/End: Original strand, 11991809 - 11991851
Alignment:
Q  319 aataaatttaatattttatctttctctcgtaataaacaattgt 361  Q
    |||||||||||||| |||||||||||| |||| ||||||||||    
T  11991809 aataaatttaatatgttatctttctcttgtaacaaacaattgt 11991851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 11825291 - 11825352
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgt 361  Q
    ||||| ||||| |||| |||||||||||||||| |||| ||| |||| ||| ||||||||||    
T  11825291 gcacatactttatcttctcaataaatttaatatgttatttttatctcataaaaaacaattgt 11825352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 12436179 - 12436224
Alignment:
Q  233 tgtatttttgcacatttacctcatattatactcttattttaatcca 278  Q
    ||||||||||||||||| | ||||||||||| || |||||||||||    
T  12436179 tgtatttttgcacattttcttcatattatacactcattttaatcca 12436224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 230 - 390
Target Start/End: Complemental strand, 23411112 - 23410952
Alignment:
Q  230 aaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatatttctannnnnnngcacacactttctcttttcaataaatttaa 329  Q
    |||| ||||||||||| |||   || |||||||| || |||||||||||  |||||||| |||       ||| ||||||||||||| ||||||||||||    
T  23411112 aaatatatttttgcactttttgatcctattataccctcattttaatccaccaatatattcctatttttttgcatacactttctctttccaataaatttaa 23411013  T
Q  330 tattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattc 390  Q
    ||| ||||||||||||||||| ||| | || ||||||||||| |||||||| |||||||||    
T  23411012 tatgttatctttctctcgtaacaaatatttcttagttactatctttttctccaacaaattc 23410952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 215 - 389
Target Start/End: Original strand, 14093235 - 14093409
Alignment:
Q  215 aacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatatttctannnnnnngcacacactttctct 314  Q
    |||| ||||||||| |  ||||||||||||||||| | || |||||||| || |||||||||||| |||| | |||||       ||||||||||| ||     
T  14093235 aacaccaaattagcaatgtgtatttttgcacattttcttcctattataccctcattttaatccatcaataaacttctatttttttgcacacactttatcc 14093334  T
Q  315 tttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaatt 389  Q
    || ||||||||||||||| | ||||||||||||||| ||||||||||  |||| ||| |||||||  ||||||||    
T  14093335 ttccaataaatttaatatgtcatctttctctcgtaacaaacaattgtcggttattatctttttctacaacaaatt 14093409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 397
Target Start/End: Complemental strand, 8049868 - 8049771
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    ||||||||||| | ||| ||||||||||||||| ||||||||||||| ||| |||||||||||| ||| ||| |||||||| | ||||||| ||||||    
T  8049868 gcacacactttatatttccaataaatttaatatgttatctttctctcataacaaacaattgttacttattatctttttctccatcaaattcatatttt 8049771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 302 - 397
Target Start/End: Complemental strand, 31660958 - 31660863
Alignment:
Q  302 acacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    ||||||||||||||| ||||||||||||| | ||||||||||||| ||  ||||||| |||||||||| | |||||||  ||||||||||| ||||    
T  31660958 acacactttctctttccaataaatttaatgtgttatctttctctcatagcaaacaatcgttagttactctctttttcttcaacaaattcttttttt 31660863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 390
Target Start/End: Complemental strand, 25057075 - 25056986
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattc 390  Q
    ||||||||||| ||||| ||||||||||||| | ||||||||||||| ||| ||||| ||| | |||| ||||||||||||||||||||||    
T  25057075 gcacacactttatctttccaataaatttaatgtgttatctttctctcataacaaacagttg-tggttattatatttttctctaacaaattc 25056986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 300 - 367
Target Start/End: Original strand, 6110733 - 6110800
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagtta 367  Q
    ||||||||||||  ||||||||||||||||||| | |||||||||| |||| ||||||||||||||||    
T  6110733 gcacacactttccgttttcaataaatttaatatgtcatctttctcttgtaacaaacaattgttagtta 6110800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 318 - 397
Target Start/End: Complemental strand, 8049747 - 8049668
Alignment:
Q  318 caataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    ||||||||||||||| ||||||||||||| ||| |||||||||||  ||| ||| |||||||| ||||||||| ||||||    
T  8049747 caataaatttaatatgttatctttctctcataacaaacaattgttgcttattatctttttctccaacaaattcatatttt 8049668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 238 - 397
Target Start/End: Original strand, 2437273 - 2437432
Alignment:
Q  238 ttttgcacatttacctcatattatactcttattttaatccattaatatatttctannnnnnngcacacactttctcttttcaataaatttaatattttat 337  Q
    |||||||||||| | || ||||||||  | |||||||||||  |||| ||| |||       ||||||||||| ||||| ||||||||||||||| ||||    
T  2437273 ttttgcacattttcttcctattataccatcattttaatccaccaataaattcctatttttttgcacacactttatctttccaataaatttaatatgttat 2437372  T
Q  338 ctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    || |||||| ||| |||| ||||| | ||| ||| |||||||  |||||||| |||||||    
T  2437373 ctatctctcataacaaactattgtcaattattatctttttcttcaacaaatttttatttt 2437432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 396
Target Start/End: Complemental strand, 8461173 - 8461116
Alignment:
Q  339 tttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttattt 396  Q
    |||||||| ||||||||| ||||||||||||||||||||||| ||||||||| |||||    
T  8461173 tttctctcataataaacatttgttagttactatatttttctccaacaaattcctattt 8461116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 383
Target Start/End: Complemental strand, 14093076 - 14093027
Alignment:
Q  334 ttatctttctctcgtaataaacaattgttagttactatatttttctctaa 383  Q
    |||||||||||||||||||||||||||  ||||| ||| |||||||||||    
T  14093076 ttatctttctctcgtaataaacaattgccagttattatctttttctctaa 14093027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 397
Target Start/End: Complemental strand, 31656089 - 31656001
Alignment:
Q  309 ttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    |||||||||||||||||||||| | |||| |||||||| ||| ||||| |  ||||||||| | ||||| |  || |||||||||||||    
T  31656089 ttctcttttcaataaatttaatgtgttatatttctctcataacaaacagtcattagttactctcttttttttcaagaaattcttatttt 31656001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 288
Target Start/End: Complemental strand, 6026659 - 6026561
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatatt 288  Q
    |||||||||||||||||  ||||| ||||  ||| |||| || ||||| ||||||| ||| | |  ||||||||||| |||||||||||  ||||||||    
T  6026659 tttttaagtgtcgttttagaatattaacacaaaaatagcaaagtgtatgtttgcactttttctttctattatactctcattttaatccacgaatatatt 6026561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 332
Target Start/End: Original strand, 21526955 - 21527062
Alignment:
Q  225 tagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatatttctannnnnnngcacacactttctcttttcaataaa 324  Q
    ||||||| |||||||||||||| ||   || ||||| || || ||||||||||| |||||  || |||       ||||||||||| |||||||||||||    
T  21526955 tagcgaagtgtatttttgcacacttttttcctattacaccctcattttaatccactaataatttcctatttttttgcacacactttatcttttcaataaa 21527054  T
Q  325 tttaatat 332  Q
    ||||||||    
T  21527055 tttaatat 21527062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 369
Target Start/End: Complemental strand, 4123175 - 4123118
Alignment:
Q  312 tcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttact 369  Q
    ||||| ||||||||||||| | ||||||||||||| ||| |||||||| || ||||||    
T  4123175 tctttccaataaatttaatgtgttatctttctctcataacaaacaattttttgttact 4123118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 26252118 - 26252174
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaaca 356  Q
    ||||||||||| |||||  |||||||||||||| |||| ||| |||||||| |||||    
T  26252118 gcacacactttatctttctaataaatttaatatgttatatttttctcgtaacaaaca 26252174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 300 - 397
Target Start/End: Complemental strand, 9808129 - 9808032
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    ||||||||||| |||||  |||||||||||||| ||||||||||||||||| |||||||| | ||||| ||| |||||||| ||||||||||||||||    
T  9808129 gcacacactttatctttctaataaatttaatatgttatctttctctcgtaacaaacaattatcagttattatctttttctccaacaaattcttatttt 9808032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 215 - 361
Target Start/End: Original strand, 24073359 - 24073505
Alignment:
Q  215 aacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatatttctannnnnnngcacacactttctct 314  Q
    |||| |||| |||| || ||||||||||||||||| | || || ||||||||  ||||||||||  |||| |||||||       ||||||||||| |||    
T  24073359 aacaccaaaatagcaaagtgtatttttgcacattttcttcctaatatactctcgttttaatccaccaataaatttctatttctttgcacacactttatct 24073458  T
Q  315 tttcaataaatttaatattttatctttctctcgtaataaacaattgt 361  Q
    |||||||||||||||||| |||| |||||||||||| ||||||||||    
T  24073459 tttcaataaatttaatatgttatatttctctcgtaacaaacaattgt 24073505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 185 - 371
Target Start/End: Complemental strand, 22349562 - 22349381
Alignment:
Q  185 attcttttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaata 284  Q
    |||||||||||| |||| |||| ||||||  ||| || |||| |||| |||||||||||   ||||  |  |||||||| |||||||||||| |  ||||    
T  22349562 attcttttttaaatgtcattttaaaatattgacaccagattatcgaagtgtatttttgcc--tttatgttttattatacccttattttaatctaccaata 22349465  T
Q  285 tatttctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactat 371  Q
    ||||||||        |||||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||    
T  22349464 tatttctatttgtt--cacacattttctcttttcaataaattaaatatgttatctttctctcgtaa-aaacaattgttagttactat 22349381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 194 - 389
Target Start/End: Complemental strand, 45666922 - 45666729
Alignment:
Q  194 taagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatatttctan 293  Q
    |||||||| |||| ||| ||  ||| |||| ||||||  ||||||||||||||||| | || |||||||| || |||||||||||  |||| ||| |||     
T  45666922 taagtgtctttttaaaaaattcacaccaaaatagcgatgtgtatttttgcacattttcttcctattataccctcattttaatccaccaataaattcctat 45666823  T
Q  294 nnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaatt 389  Q
          ||||||||||| ||||||||||||| |||| || ||||||  |||| |||| |||||||||||||||  ||| |||||||| ||||||||    
T  45666822 ttttttgcacacactttatcttttcaataaaattaacatgttatct--ctcttgtaacaaacaattgttagttgttatctttttctccaacaaatt 45666729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 308 - 371
Target Start/End: Original strand, 53370169 - 53370232
Alignment:
Q  308 tttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactat 371  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  53370169 tttctcttttcaataaatttaatatgttatatttctctcgtaataaacatttgttagttactat 53370232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 257 - 390
Target Start/End: Original strand, 49299389 - 49299522
Alignment:
Q  257 attatactcttattttaatccattaatatatttctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaaca 356  Q
    ||||||| || |||||||||||| |||| ||| |||       |||| |||||| | ||| ||||||||||||||| ||||||||| ||||||| |||||    
T  49299389 attataccctcattttaatccatcaataaattactatttttttgcactcactttatttttccaataaatttaatatgttatctttcactcgtaacaaaca 49299488  T
Q  357 attgttagttactatatttttctctaacaaattc 390  Q
    ||||| ||||| ||| ||||| ||||||||||||    
T  49299489 attgtcagttattatctttttatctaacaaattc 49299522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 390
Target Start/End: Complemental strand, 53393948 - 53393792
Alignment:
Q  233 tgtatttttgcacatttacctcatattatactcttattttaatccattaatatatttctannnnnnngcacacactttctcttttcaataaatttaatat 332  Q
    ||||||||||||||||| | ||||||| ||||||||||||||||||    || ||| |||       ||||||||||| ||| |||||||| ||||||||    
T  53393948 tgtatttttgcacattttcttcatattctactcttattttaatccacctttaaattcctattattttgcacacactttatctattcaataattttaatat 53393849  T
Q  333 tttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattc 390  Q
     |||| ||| ||| ||||||||||||||| ||||| |||  ||||||| |||||||||    
T  53393848 gttatatttttcttgtaataaacaattgtcagttattat-cttttctccaacaaattc 53393792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 300 - 367
Target Start/End: Complemental strand, 50721445 - 50721378
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagtta 367  Q
    ||||||||||| ||||| || |||||||||||| ||||||||||||||||| ||||||||||||||||    
T  50721445 gcacacactttatctttccactaaatttaatatgttatctttctctcgtaacaaacaattgttagtta 50721378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 184 - 274
Target Start/End: Original strand, 23674118 - 23674208
Alignment:
Q  184 tattcttttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaa 274  Q
    ||||| ||||||||||||||||||||||| |||||  |||||||  || |||||||||||||| || | ||||||||||| ||||||||||    
T  23674118 tattcgtttttaagtgtcgttttgaaatagcaacactaaattagaaaagtgtatttttgcacacttccttcatattatacccttattttaa 23674208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 397
Target Start/End: Original strand, 38840006 - 38840103
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    |||||||| || ||||| ||||||||||||||| |||||||| ||| |||| |||||| ||| ||||| ||| |||||||| ||||||||| ||||||    
T  38840006 gcacacaccttatctttccaataaatttaatatattatctttttcttgtaacaaacaaatgtcagttattatctttttctcaaacaaattcctatttt 38840103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 386
Target Start/End: Complemental strand, 17330994 - 17330842
Alignment:
Q  233 tgtatttttgcacatttacctcatattatactcttattttaatccattaatatatttctannnnnnngcacacactttctcttttcaataaatttaatat 332  Q
    ||||||||||||||||| | || |||||||| || |||||||| ||| |||| ||| |||        |||||||||| ||||| |||||||||||||||    
T  17330994 tgtatttttgcacattttcttcctattataccctaattttaatgcatcaataaattcctattttttt-cacacactttatctttccaataaatttaatat 17330896  T
Q  333 tttatctttctctcgtaataaacaattgttagttactatatttttctctaacaa 386  Q
     |||| ||||||||| || ||||||||||| |||| ||| |||| ||| |||||    
T  17330895 attatttttctctcgaaacaaacaattgtttgttattatcttttcctccaacaa 17330842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 233 - 397
Target Start/End: Complemental strand, 46250430 - 46250268
Alignment:
Q  233 tgtatttttgcacatttacctcatattatactcttattttaatccattaatatatttctannnnnnngcacacactttctcttttcaataaatttaatat 332  Q
    |||||||||| || ||||| |  |||||||||||||||||||||||  ||||||||  ||        |||||||||||||||| ||||||||| | |||    
T  46250430 tgtatttttgtacctttactttctattatactcttattttaatccaccaatatattcatattttttt-cacacactttctctttccaataaattgagtat 46250332  T
Q  333 tttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
     |||||||| | |||||| ||||||||||||  |||||| |||||||| ||||||| ||| ||||    
T  46250331 attatctttttttcgtaagaaacaattgtta-atactatctttttctccaacaaatccttttttt 46250268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 345
Target Start/End: Original strand, 26625589 - 26625740
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatattt 289  Q
    |||||||| ||| ||||||||||| |||| ||| ||| |||| |||||||||||||  |||| || ||||||||  |||||||||||    ||||||||     
T  26625589 tttttaagggtcattttgaaatattaacaccaagttatcgaagtgtatttttgcactcttacttcctattatacctttattttaatc----aatatattc 26625684  T
Q  290 ctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctct 345  Q
     ||       | ||| ||||||||||| ||||||||||||||| ||||||||||||    
T  26625685 ttatttttttgtacatactttctctttccaataaatttaatatgttatctttctct 26625740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 278
Target Start/End: Original strand, 1821066 - 1821160
Alignment:
Q  184 tattcttttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatcca 278  Q
    ||||| |||||||||||| |||| ||| || |||| |||| ||||||  ||||||||||||||||| | || |||||||| || |||||||||||    
T  1821066 tattcctttttaagtgtctttttaaaaaattaacaccaaaatagcgatgtgtatttttgcacattttcttcctattataccctcattttaatcca 1821160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 303 - 397
Target Start/End: Complemental strand, 6949537 - 6949443
Alignment:
Q  303 cacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    |||||||| ||||| ||||||||||||||| |||||||||  || ||| ||||||||||  ||||  || |||||||| ||||||||| ||||||    
T  6949537 cacactttatctttccaataaatttaatatgttatctttcgttcataacaaacaattgtcggttataatctttttctccaacaaattcatatttt 6949443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 397
Target Start/End: Original strand, 34031582 - 34031678
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    ||||||||||| ||||||||  |||||||| || |||||||| |||||||| ||||||||||||| || ||| ||||| || ||| ||||| ||||||    
T  34031582 gcacacactttatcttttcaggaaatttaacatgttatcttt-tctcgtaacaaacaattgttagataatatctttttatccaactaattcctatttt 34031678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 359
Target Start/End: Original strand, 47943956 - 47944124
Alignment:
Q  185 attcttttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaata 284  Q
    |||| ||| |||||||| |||| ||| || |||| |||| ||||||  ||||||||||||||||| | || |||||||| || |||||||||||  ||||    
T  47943956 attcctttgtaagtgtctttttaaaaaattaacaccaaaatagcgatgtgtatttttgcacattttcttcctattataccctcattttaatccaccaata 47944055  T
Q  285 tatttctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaatt 359  Q
     ||| |||        |||||||||| |||||  |||||||||||||| |||| ||| |||||| ||||||||||    
T  47944056 aattcctattt-----cacacactttatctttctaataaatttaatatgttatgtttatctcgt-ataaacaatt 47944124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 389
Target Start/End: Complemental strand, 30912882 - 30912827
Alignment:
Q  334 ttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaatt 389  Q
    |||| |||||||||||| ||||| |||||||||||||| |||||||| ||||||||    
T  30912882 ttatttttctctcgtaacaaacatttgttagttactatctttttctccaacaaatt 30912827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 284
Target Start/End: Complemental strand, 49263690 - 49263595
Alignment:
Q  189 ttttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaata 284  Q
    ||||||||||||| ||||  || || |||| |||| ||||||| ||||||||||||||||| | || ||||| || || ||||||||||| |||||    
T  49263690 ttttttaagtgtctttttagaaaattaacaccaaaatagcgaagtgtatttttgcacattttcttcctattagaccctgattttaatccactaata 49263595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 284
Target Start/End: Complemental strand, 55344204 - 55344109
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcaca-tttacctcatattatactcttattttaatccattaata 284  Q
    |||||||||||||||||  ||| | ||||  ||| |||||||||||||||||||||| |||   ||||||||||| || ||||||||||| |||||    
T  55344204 tttttaagtgtcgttttagaattttaacacaaaaatagcgaaatgtatttttgcacattttttttcatattataccctcattttaatccactaata 55344109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 361
Target Start/End: Original strand, 37209545 - 37209714
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatattt 289  Q
    |||||||||||| ||||  || || | || |||| ||||||  |||||||||| |||||| | || ||| ||||||||||||||||||   |||| |||     
T  37209545 tttttaagtgtctttttagaaaattaccaccaaaatagcgatgtgtatttttgtacattttcttcctatcatactcttattttaatccgccaataaattc 37209644  T
Q  290 ctannnnnnngcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgt 361  Q
     ||       ||||||||||| ||||||||||||||||||||| ||| |||| ||||| || ||||||||||    
T  37209645 ttattcttttgcacacactttatcttttcaataaatttaatatgtta-cttt-tctcggaacaaacaattgt 37209714  T

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Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 397
Target Start/End: Complemental strand, 25494306 - 25494212
Alignment:
Q  301 cacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    |||||||||| | |||||||||||||||  || |||||||  |||| ||| |||||||||| | ||| ||| |||||||| ||||||||| ||||||    
T  25494306 cacacactttatattttcaataaattta--atgttatcttcatctcataacaaacaattgtcatttattatctttttctccaacaaattcctatttt 25494212  T

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Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 359
Target Start/End: Original strand, 19443092 - 19443211
Alignment:
Q  235 tatttttgcacatttacctcatattatactcttattttaatccattaatatatttctannnnnnngcacacactttctcttttcaataaatttaatattt 334  Q
    ||||||||||||||| | || |||||||| || |||||||||||  |||| |||||||         ||||| ||| ||||| ||||||||||||||| |    
T  19443092 tatttttgcacattttcttcctattataccctcattttaatccaccaataaatttctattta-----acacattttatctttccaataaatttaatatgt 19443186  T
Q  335 tatctttctctcgtaataaacaatt 359  Q
    ||| ||||| |||||| ||||||||    
T  19443187 tatgtttctttcgtaacaaacaatt 19443211  T

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Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 337
Target Start/End: Complemental strand, 41503138 - 41503034
Alignment:
Q  233 tgtatttttgcacatttacctcatattatactcttattttaatccattaatatatttctannnnnnngcacacactttctcttttcaataaatttaatat 332  Q
    ||||||||||||||||| | || |||||||| || | |||||||||  ||||||||| ||       ||||||||||| |||||  ||||||||||||||    
T  41503138 tgtatttttgcacattttcttcctattataccctcaatttaatccaccaatatatttatatattttggcacacactttatctttctaataaatttaatat 41503039  T
Q  333 tttat 337  Q
     ||||    
T  41503038 gttat 41503034  T

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Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 390
Target Start/End: Original strand, 9089141 - 9089211
Alignment:
Q  320 ataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattc 390  Q
    ||||||||||||| ||||  ||||||||||| ||| ||||||  |||| ||| |||||||| |||||||||    
T  9089141 ataaatttaatatgttatagttctctcgtaacaaataattgtcggttattatctttttctccaacaaattc 9089211  T

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Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 330
Target Start/End: Original strand, 46430403 - 46430542
Alignment:
Q  191 ttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcacatttacctcatattatactcttattttaatccattaatatatttc 290  Q
    ||||||||||| |||| ||| || |||| |||| || |||  |||||||||| | |||| | || ||||| ||||| ||||||||| |  |||| |||||    
T  46430403 ttttaagtgtctttttaaaaaattaacaccaaaataacgatgtgtatttttgaatattttcttcctattacactctcattttaatctaccaataaatttc 46430502  T
Q  291 tannnnnnngcacacactttctcttttcaataaatttaat 330  Q
    ||       ||||||||||| ||||| |||||||||||||    
T  46430503 tattttttagcacacactttatctttccaataaatttaat 46430542  T

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Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 345
Target Start/End: Complemental strand, 2685126 - 2685085
Alignment:
Q  304 acactttctcttttcaataaatttaatattttatctttctct 345  Q
    ||||||||||||||||||||||||||  | ||||||||||||    
T  2685126 acactttctcttttcaataaatttaacgtgttatctttctct 2685085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 20782952 - 20782907
Alignment:
Q  301 cacacactttctcttttcaataaatttaatattttatctttctctc 346  Q
    |||||| ||||||||||||||||||||||||| |||| | ||||||    
T  20782952 cacacattttctcttttcaataaatttaatatgttatatgtctctc 20782907  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 24537905 - 24537961
Alignment:
Q  190 tttttaagtgtcgttttgaaatatcaacatcaaattagcgaaatgtatttttgcaca 246  Q
    |||||||||||||||||  ||| | ||||| ||| ||||||| ||||||||||||||    
T  24537905 tttttaagtgtcgttttagaattttaacataaaaatagcgaagtgtatttttgcaca 24537961  T

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Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 332
Target Start/End: Original strand, 37371134 - 37371166
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatat 332  Q
    ||||||||||| |||||||||||||||||||||    
T  37371134 gcacacactttatcttttcaataaatttaatat 37371166  T

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Target: scaffold0841 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0841
Description:

Target: scaffold0841; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 390
Target Start/End: Original strand, 4258 - 4348
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattc 390  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||||| | | | |||||||| |||||||||    
T  4258 gcacacactttctctttccaataaatttaatatattatctttctctcgtaacaaacatttgttagtcaatgtgtttttctccaacaaattc 4348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0841; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 385
Target Start/End: Original strand, 3941 - 4026
Alignment:
Q  300 gcacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaaca 385  Q
    ||||||||||||||||| |||||||||||| || |||| |||||||||||| ||||| |||||||||| | | |||||||| ||||    
T  3941 gcacacactttctctttccaataaatttaacatgttatttttctctcgtaacaaacatttgttagttattgtgtttttctccaaca 4026  T

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Target: scaffold1327 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold1327
Description:

Target: scaffold1327; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 301 - 390
Target Start/End: Complemental strand, 1284 - 1195
Alignment:
Q  301 cacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattc 390  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||| ||| |||||||||| | ||| ||| |||||||| |||||||||    
T  1284 cacacactttatcttttcaataaatttaatatgttatctttctctcttaacaaacaattgtcacttattatctttttctccaacaaattc 1195  T

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Target: scaffold0005 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 360
Target Start/End: Complemental strand, 257363 - 257236
Alignment:
Q  233 tgtatttttgcacatttacctcatattatactcttattttaatccattaatatatttctannnnnnngcacacactttctcttttcaataaatttaatat 332  Q
    ||||||||| ||||||| | || |||||||| || || ||||||||| |||| ||| |||       ||||||||||| |||||||||||||||||||||    
T  257363 tgtatttttacacattttcttcctattataccctcatattaatccatcaataaattcctatttttttgcacacactttatcttttcaataaatttaatat 257264  T
Q  333 tttatctttctctcgtaataaacaattg 360  Q
     ||||| |||||||| || |||||||||    
T  257263 gttatccttctctcgaaacaaacaattg 257236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1986 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold1986
Description:

Target: scaffold1986; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 301 - 390
Target Start/End: Complemental strand, 653 - 564
Alignment:
Q  301 cacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattc 390  Q
    |||||||||| ||||| ||||||||| | ||| ||||||||||||||||||||||| ||||  |||| ||| |||||||| |||||||||    
T  653 cacacactttatctttccaataaattaagtatgttatctttctctcgtaataaacacttgtctgttattatctttttctccaacaaattc 564  T

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Target: scaffold0637 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0637
Description:

Target: scaffold0637; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 397
Target Start/End: Complemental strand, 3862 - 3766
Alignment:
Q  301 cacacactttctcttttcaataaatttaatattttatctttctctcgtaataaacaattgttagttactatatttttctctaacaaattcttatttt 397  Q
    |||||||||||||||| | ||||||||||||| |||||||| |||| ||| ||| || | ||||||| ||| | |||||||||||||||| ||||||    
T  3862 cacacactttctctttccgataaatttaatatgttatctttgtctcataacaaataaattttagttattatctctttctctaacaaattcgtatttt 3766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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