View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14421_low_15 (Length: 379)
Name: NF14421_low_15
Description: NF14421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14421_low_15 |
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| [»] scaffold0221 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 14493404 - 14493042
Alignment:
| Q |
1 |
tattccaaattagataacaaaactatttggtctggtggttctcaacttgtcaagacaccatataactgtccaaattccttaaaccatgtcacttctgctt |
100 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| || ||||||||| ||||||| ||| ||||||| |
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| T |
14493404 |
tattccaaatgagataacaaaactatttggtttggtggttctcaacttgtcaagaaaccatataagtggtcaaattcctaaaaccatttcaaatctgctt |
14493305 |
T |
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| Q |
101 |
caattatcacctcttgatctctcacacaaccaactttccggaacaattccttcaagcttgtcctccttgtcatttttagggtccttggatgtgtccgata |
200 |
Q |
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| T |
14493304 |
caattatcatcccttgatctctcaaacaaccaactttccggaacaattccttcaagcttgtcttccttgtcatttttagggtccttggatttgtccgata |
14493205 |
T |
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| Q |
201 |
acatcctctcgggtgtcattccatatacaggccatatgacaacctttgatgcaatatattttactgggaatccgggtctctgtggtcctccacttcttgt |
300 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| ||||| || || |||| | ||||| ||||||||||||||||||| |||||||| |
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| T |
14493204 |
acaacctctcgggtgtcattccatatacaggccatatgacaacttttgaagctatgactttttcgaggaattcgggtctctgtggtcctccccttcttgt |
14493105 |
T |
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| Q |
301 |
gaagtgttcagatgatggtgacaacagacagagtagtgatgatacaaatgatgagggattgtt |
363 |
Q |
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| T |
14493104 |
gaggtgttcagatgatggtgacaacagacagagtagtgatgatacaaatgatgagggattgtt |
14493042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 14457946 - 14458241
Alignment:
| Q |
1 |
tattccaaattagataacaaaactatttggtctggtggttctcaacttgtcaagacaccatataactgtccaaattccttaaaccatgtcacttctgctt |
100 |
Q |
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| T |
14457946 |
tattcccaatgaaataacaaaactatccggtttagttgttctcaacttgtcaagaaaccatataactggccaaattcacgaaaccatgtcaaatctgctt |
14458045 |
T |
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| Q |
101 |
caattatcacctcttgatctctcacacaaccaactttccggaacaattccttcaagcttgtcctccttgtcatttttagggtccttggatgtgtccgata |
200 |
Q |
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||||||||| |||||||||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||||| |||||| | ||| ||||| ||| |
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| T |
14458046 |
caattatcatctcttgatctctcaaacaaccaactttctggaccaattccttcaagcttgtcttccttgtcatttttggggtccctagatttgtccaata |
14458145 |
T |
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| Q |
201 |
acatcctctcgggtgtcattccatatacaggccatatgacaacctttgatgcaatatattttactgggaatccgggtctctgtggtcctccacttc |
296 |
Q |
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| T |
14458146 |
ataacctgtctggtgtcattccttatacaggccatatgacaacttttgaagctatcactttttctgggaatcctagtctctgtggtccaccacttc |
14458241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 14468986 - 14468676
Alignment:
| Q |
1 |
tattccaaattagataacaaaactatttggtctggtggttctcaacttgtcaagacaccatataactgtccaaattccttaaaccatgtcacttctgctt |
100 |
Q |
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|||||| ||| | ||||||||||||| |||| || || ||||||||||||||||| |||||||||||| | |||||||| ||||||||||| ||||| | |
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| T |
14468986 |
tattcccaatgaaataacaaaactatctggtttgatgattctcaacttgtcaagaaaccatataactggcaaaattcctgaaaccatgtcaaatctgcat |
14468887 |
T |
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| Q |
101 |
caattatcacctcttgatctctcacacaaccaactttccggaacaattccttcaagcttgtcctccttgtcatttttagggtccttggatgtgtccgata |
200 |
Q |
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| T |
14468886 |
caactagaatctcttgatctctcgagcaaccgactttctggtaagattcctttaagtttgccttccttgtcatttttggggggcctaaacttgtcccaca |
14468787 |
T |
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| Q |
201 |
acatcctctcgggtgtcattccatatacaggccatatgacaacctttgatgcaatatattttactgggaatccgggtctctgtggtcctccacttcttgt |
300 |
Q |
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||| ||| |||||||||||| || |||||||| |||||||||||||||||| | |||||||||||||||| |||| |||||||||||||||| || |
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| T |
14468786 |
acaaccttcagggtgtcattccttacacaggccaaatgacaacctttgatgcatcagcttttactgggaatccgagtctttgtggtcctccacttccggt |
14468687 |
T |
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| Q |
301 |
gaagtgttcag |
311 |
Q |
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|||||| |||| |
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| T |
14468686 |
gaagtgctcag |
14468676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 10165 - 10240
Alignment:
| Q |
126 |
acaaccaactttccggaacaattccttcaagcttgtcctccttgtcatttttagggtccttggatgtgtccgataa |
201 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| | ||| ||||| |||| |
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| T |
10165 |
acaaccaactttctggaacaattccttcaagcttgtcttccttgtcatttttggggtccctagatttgtccaataa |
10240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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