View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14421_low_16 (Length: 377)
Name: NF14421_low_16
Description: NF14421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14421_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 41090288 - 41089914
Alignment:
| Q |
1 |
agccgaggatcgaaatcccaaatgaatgttgctggtattcataaacaaaaacatgtgtagtctatagatctgccaattcaatgcagctaggaagaagtca |
100 |
Q |
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| T |
41090288 |
agccgaggatcgaaatcccaaatgaatgttgctgctattcataaacaaaaacatgtgtagtctatagatctgcgaattcaatgcagctaggaagaagtca |
41090189 |
T |
|
| Q |
101 |
gcaaaacaatgaatatatatgccaaaaatggtttcttggccttatctctccttccacatccttgtcattgatctggaagggattaatttaaag------- |
193 |
Q |
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| T |
41090188 |
gcaaaacaatgaatatatatgccaaaaatggtttcttggccttatctctccttccacatccttgtcattgatctggaagggattaatttaaagcattttc |
41090089 |
T |
|
| Q |
194 |
-----cattgtttataaatcattcatatttccaagtatttttagacgttgatcaaatggaaacaccctaccacatatgccaacataaatgtgatcgttaa |
288 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41090088 |
ataagcattgtttataaatcattcatatttcgaagtatttttagacgttgagcaaatagaaacaccctaccacatatgccaacataaatgtgatcgttaa |
41089989 |
T |
|
| Q |
289 |
catttattc----nnnnnnnnnnngtgattgtgaccaagaggaagctatttttagcaaaagagaaaactattttt |
359 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41089988 |
catttattcaaaaaaaaaaaaaaagtgattgtgaccaagaggaagctatttttagcaaaagagaaaactattttt |
41089914 |
T |
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