View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14421_low_17 (Length: 374)

Name: NF14421_low_17
Description: NF14421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14421_low_17
NF14421_low_17
[»] chr2 (7 HSPs)
chr2 (7-360)||(20984882-20985235)
chr2 (310-360)||(21254577-21254627)
chr2 (195-235)||(21254628-21254668)
chr2 (295-356)||(1331496-1331557)
chr2 (295-356)||(12041113-12041174)
chr2 (295-356)||(15320112-15320173)
chr2 (295-356)||(41166664-41166725)
[»] chr8 (1 HSPs)
chr8 (295-345)||(11219486-11219536)
[»] chr7 (5 HSPs)
chr7 (295-358)||(29211140-29211203)
chr7 (298-356)||(11399631-11399689)
chr7 (294-356)||(40849368-40849430)
chr7 (296-356)||(524381-524441)
chr7 (295-355)||(43202915-43202975)
[»] chr4 (3 HSPs)
chr4 (295-358)||(23449497-23449560)
chr4 (295-356)||(48292942-48293003)
chr4 (255-285)||(1564497-1564527)
[»] chr5 (2 HSPs)
chr5 (295-356)||(36568216-36568277)
chr5 (295-355)||(5175153-5175213)


Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 7 - 360
Target Start/End: Original strand, 20984882 - 20985235
Alignment:
Q  7 gacccgacaatgagttgctccagcgtagattttttgcaatttgaccgtagtacgcttcatgcaaggaggctgttactctgaaatagactggtggatgatt 106  Q
    |||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||    
T  20984882 gacccgacaatgagttgctccagcatagttttttcgcaatttgaccgtagtacgcttcatgcaaggaggtggttactctgaaatagactgatggatgatt 20984981  T
Q  107 cttagctacataatatttaagccaacgatcaaagtctaggtagctttcaacatcacacacacggtccgccctacataaattatgaaaacaagggtttcag 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20984982 cttagctacataatatttaagccaacgatcaaagtctaggtagctttcaacatcacacacacggtccgccctacataaattatgaaaacaagggtttcag 20985081  T
Q  207 gtggtgttccaaaggcttattaagtttgaagcaaatcaaaagtaaggttgtttaaaaccaaaccaatccaaaagaaaaactacataaacatttggtttgg 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20985082 gtggtgttccaaaggcttattaagtttgaagcaaatcaaaagtaaggttgtttaaaaccaaaccaatccaaaagaaaaaccacataaacatttggtttgg 20985181  T
Q  307 atctattcggatcattttttaactcaatcacatggtttgatttagtttgcagat 360  Q
    || |||||||||||||||||||||||| ||| ||||||||||  ||||||||||    
T  20985182 atgtattcggatcattttttaactcaaccacgtggtttgattcggtttgcagat 20985235  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 310 - 360
Target Start/End: Complemental strand, 21254627 - 21254577
Alignment:
Q  310 tattcggatcattttttaactcaatcacatggtttgatttagtttgcagat 360  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  21254627 tattcggatcattttttaactcaatcacatggtttggtttggtttgcagat 21254577  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 21254668 - 21254628
Alignment:
Q  195 caagggtttcaggtggtgttccaaaggcttattaagtttga 235  Q
    ||||||||| || ||||||||||||||||||||||||||||    
T  21254668 caagggttttagttggtgttccaaaggcttattaagtttga 21254628  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 1331557 - 1331496
Alignment:
Q  295 catttggtttggatctattcggatcattttttaactcaatcacatggtttgatttagtttgc 356  Q
    |||||| ||||||| ||||||||||| |||||  ||||| ||||||||||| ||| ||||||    
T  1331557 catttgatttggatgtattcggatcacttttttcctcaaccacatggtttggtttggtttgc 1331496  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 356
Target Start/End: Original strand, 12041113 - 12041174
Alignment:
Q  295 catttggtttggatctattcggatcattttttaactcaatcacatggtttgatttagtttgc 356  Q
    |||||||||||||| ||||||||||| ||||| |||||| | ||| ||||| ||| ||||||    
T  12041113 catttggtttggatgtattcggatcacttttttactcaaccgcatagtttggtttggtttgc 12041174  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 356
Target Start/End: Original strand, 15320112 - 15320173
Alignment:
Q  295 catttggtttggatctattcggatcattttttaactcaatcacatggtttgatttagtttgc 356  Q
    ||||||||| |||| ||||| ||| ||||||| |||||| ||||||||||| ||| ||||||    
T  15320112 catttggttaggatgtattcagataatttttttactcaaccacatggtttggtttggtttgc 15320173  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 41166725 - 41166664
Alignment:
Q  295 catttggtttggatctattcggatcattttttaactcaatcacatggtttgatttagtttgc 356  Q
    ||||||||||||||  |||| ||||| ||||| |||||| | ||||||||||||| ||||||    
T  41166725 catttggtttggatgcattcagatcactttttcactcaaccgcatggtttgatttggtttgc 41166664  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 11219536 - 11219486
Alignment:
Q  295 catttggtttggatctattcggatcattttttaactcaatcacatggtttg 345  Q
    ||||||||| |||| ||||||||||||||||| ||||||||||||||||||    
T  11219536 catttggttcggatgtattcggatcatttttttactcaatcacatggtttg 11219486  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 358
Target Start/End: Original strand, 29211140 - 29211203
Alignment:
Q  295 catttggtttggatctattcggatcattttttaactcaatcacatggtttgatttagtttgcag 358  Q
    |||||||||||||| ||||||||||| ||||| |||||| | ||||||||| ||| ||||||||    
T  29211140 catttggtttggatatattcggatcacttttttactcaaccgcatggtttggtttggtttgcag 29211203  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 356
Target Start/End: Complemental strand, 11399689 - 11399631
Alignment:
Q  298 ttggtttggatctattcggatcattttttaactcaatcacatggtttgatttagtttgc 356  Q
    ||||||||||| ||||||||||| ||||| | |||| | ||||||||||||| ||||||    
T  11399689 ttggtttggatgtattcggatcacttttttagtcaaccgcatggtttgatttggtttgc 11399631  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 356
Target Start/End: Complemental strand, 40849430 - 40849368
Alignment:
Q  294 acatttggtttggatctattcggatcattttttaactcaatcacatggtttgatttagtttgc 356  Q
    ||||||| ||||||| ||||||||||| ||||| |||||| | ||||||||| ||| ||||||    
T  40849430 acatttgatttggatgtattcggatcacttttttactcaaccgcatggtttggtttggtttgc 40849368  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 524381 - 524441
Alignment:
Q  296 atttggtttggatctattcggatcattttttaactcaatcacatggtttgatttagtttgc 356  Q
    ||||||||||||| ||||||||||| |||||  ||||| | ||||||||| ||| ||||||    
T  524381 atttggtttggatgtattcggatcacttttttgctcaaccgcatggtttggtttggtttgc 524441  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 43202975 - 43202915
Alignment:
Q  295 catttggtttggatctattcggatcattttttaactcaatcacatggtttgatttagtttg 355  Q
    ||||||||||| || ||||| ||||| ||||| |||||||| ||||||||| ||| |||||    
T  43202975 catttggtttgcatatattcagatcacttttttactcaatcgcatggtttggtttggtttg 43202915  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 358
Target Start/End: Original strand, 23449497 - 23449560
Alignment:
Q  295 catttggtttggatctattcggatcattttttaactcaatcacatggtttgatttagtttgcag 358  Q
    |||||| ||||||| ||||||||||||||||| |||||| | ||||||||| || |||||||||    
T  23449497 catttgatttggatgtattcggatcatttttttactcaaccgcatggtttggttcagtttgcag 23449560  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 356
Target Start/End: Original strand, 48292942 - 48293003
Alignment:
Q  295 catttggtttggatctattcggatcattttttaactcaatcacatggtttgatttagtttgc 356  Q
    |||||||||||||| ||||||||||| |||||  ||||| ||||||||||| ||| ||||||    
T  48292942 catttggtttggatgtattcggatcacttttttcctcaaccacatggtttggtttggtttgc 48293003  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 285
Target Start/End: Original strand, 1564497 - 1564527
Alignment:
Q  255 tgtttaaaaccaaaccaatccaaaagaaaaa 285  Q
    |||||||||||||||||||||||||||||||    
T  1564497 tgtttaaaaccaaaccaatccaaaagaaaaa 1564527  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 36568277 - 36568216
Alignment:
Q  295 catttggtttggatctattcggatcattttttaactcaatcacatggtttgatttagtttgc 356  Q
    |||||||||  ||| ||||| ||||| |||||||||||| ||||||||||| || |||||||    
T  36568277 catttggttcagatgtattcagatcaatttttaactcaaccacatggtttggttcagtttgc 36568216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 5175153 - 5175213
Alignment:
Q  295 catttggtttggatctattcggatcattttttaactcaatcacatggtttgatttagtttg 355  Q
    ||||||||| |||| |||| |||||||||||| |||||| ||| ||||||| ||| |||||    
T  5175153 catttggttcggatgtatttggatcatttttttactcaaccacgtggtttggtttggtttg 5175213  T

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