View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14421_low_19 (Length: 369)
Name: NF14421_low_19
Description: NF14421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14421_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 3625528 - 3625623
Alignment:
| Q |
8 |
cgaataatatggccaagaaacgcaagaataactca---------aacaaaatcagcggaaacataattcctaaaaacaatcatttctgctttcttt |
94 |
Q |
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| T |
3625528 |
cgaataatatgggcaagaaacgcaagaataactcagcagttgaaaacaaaatcagcggaaacataattcgtgaaaacaatcatttctgttttcttt |
3625623 |
T |
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Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 3625794 - 3625857
Alignment:
| Q |
286 |
gctgtttggaaacacatcaaattaacaatcagc---attcatacatacatacatcccaaatctc |
346 |
Q |
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| T |
3625794 |
gctgtttggaaacacatcaacttaacaatcagcagcattcatacatacatacatcccaaatctc |
3625857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 3625654 - 3625694
Alignment:
| Q |
146 |
aaatgtatcctgggagatagacttatgccctctattgttcc |
186 |
Q |
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| T |
3625654 |
aaatgtatcctgggagatagacttatgccctctattgttcc |
3625694 |
T |
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