View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14421_low_2 (Length: 810)
Name: NF14421_low_2
Description: NF14421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14421_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 369 - 791
Target Start/End: Original strand, 54262628 - 54263051
Alignment:
| Q |
369 |
aaatgaatagcatcctgtcaagttttaggtgagggaccatttagaatctaaatacttttgatcgtgtgtagatgctgacaaataagtttgtaaggaaaaa |
468 |
Q |
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| T |
54262628 |
aaatgaatagcatcctgtcaacttttaggtgagggaccatttagaatctaaatacttttgatcgtgtgtagatgctgacaaataagtttgtaaggaaaaa |
54262727 |
T |
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| Q |
469 |
gaaatgggggtgagtgggtggggtgtaaaaaattgtggaaagaagggggataggtaacaatcataattggttttagggttgcgttagaaaaataatgcgg |
568 |
Q |
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| T |
54262728 |
gaaatgggggtgagtgagtggggtgtaaaaaattgtggaaagaagggggataggtaacaatcataattggttttagggttgcgttagaaaaataatgcgg |
54262827 |
T |
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| Q |
569 |
aacggagaggatactttattttggagtgaccattgggt-gggaggggaggtcattaaaaatgagaactgatcaactattttccttatctttgaacaaaga |
667 |
Q |
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| T |
54262828 |
aacggagaggatactttattttggagtgaccattgggtggggaggggaggtcattaaaaatgagaactgatcaactattttccttatctttgaacaaaga |
54262927 |
T |
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| Q |
668 |
ggccaaggtgatggtgttgaagagggaaattggtgggaaccgggtgtgggattttaggtggagaagagagttattcaagcggtaagcggaattgcttcat |
767 |
Q |
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| T |
54262928 |
ggctaaggtgatggtgttgaagagggaaattggtgggaaccgggtgtgggattttaggtggagaagagagttattctagcggtaagcggaattgcttcat |
54263027 |
T |
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| Q |
768 |
cgcatgatcgaggaattagaaaag |
791 |
Q |
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| T |
54263028 |
cgcatgattgaggaattagaaaag |
54263051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 54262373 - 54262627
Alignment:
| Q |
1 |
atgaagcattgaagaatttcattcatcgaagcgttgaagaattgttggtatgcacgcacctagttttctactacaactaataagacgatgtattggtaat |
100 |
Q |
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| T |
54262373 |
atgaagcattgaagaatttcattcatcgaagcattgaagaattgttggtatgcacgcacctagttttctactacaactaataagacgatgtattggtaat |
54262472 |
T |
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| Q |
101 |
tatgagctacaatagagtatcaactgcaaggcaaaccaagtgtactatgcttgcatgttacaactacaatgttgctgcttcatttagatgtgaaacttag |
200 |
Q |
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| T |
54262473 |
tatgagctacaatagagtatcaactgcaaggcaaaccaaatgtactatgcttgcatgttacaactacaatgttgctgcttcatttagatgtgaaacttag |
54262572 |
T |
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| Q |
201 |
gatgactgataacctgatatacataagcgaagaactataaattgtatctctcaat |
255 |
Q |
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| T |
54262573 |
gatgactgataacctgatatacaaaagcgaagaactataaattgtatctctcaat |
54262627 |
T |
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