View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14421_low_21 (Length: 332)
Name: NF14421_low_21
Description: NF14421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14421_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 42823952 - 42823653
Alignment:
| Q |
17 |
aaaataataatgggttcaatttgattaattccgacagccccgtcttttccaccatttgactttgtcctaccaccatagcccttcggttaaactagtatag |
116 |
Q |
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| T |
42823952 |
aaaagaataatggattcaatttgattaattccgacagccccgtcttttccaccatttgactttgtcctaccaccatagcccttcggttgaatttctaaag |
42823853 |
T |
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| Q |
117 |
tatcacttgttatttcatttggtatctaaactataaaaatataatataataaaggaaaatgataaccaacattcttaggacattgtttaagaaaagaaaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
42823852 |
tatcacttgttatttcatttggtatctaaactataaaaatataatataataaaggaaaatgataaccaatattcttaggatattgtttaagaaaagaaaa |
42823753 |
T |
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| Q |
217 |
atcgttgtatagaaagtgatgtaattatcactttgacaagtctttaacaggtattttcaagaaaaaataataattttaaggatttcttgaatgatgctat |
316 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| |||||| | |||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42823752 |
atcgttgcatagaaagtgatgtaattatcactttgacaagtttttaacggatatttttaagaaaaaa-aataattttaaggatttcttgaatgatgctat |
42823654 |
T |
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