View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14421_low_28 (Length: 246)
Name: NF14421_low_28
Description: NF14421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14421_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 22564998 - 22565228
Alignment:
| Q |
1 |
taacttagctgaagaggtccaaattgctcaccgccgaaggattaagttgaaaaagggtgattttgctgatgagaacaatgcaacaacagaatcagatatc |
100 |
Q |
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| T |
22564998 |
taacttagctgaggaggtccaaattgctcaccgtcgaaggattaagttgaaaaagggtgattttgctgatgagaacaatgcaacaacagaatcagatatc |
22565097 |
T |
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| Q |
101 |
gaagaaactattaagagacttgtaggtgaattgaacaagactcctcaggaagtttttgatgcacttaaaaaccagaccgttgatctcgttcttactgctc |
200 |
Q |
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| T |
22565098 |
gaagaaactattaagagacttgttggtgagttgaacaagactcctcaggaagtttttgatgcacttaaaaaccagaccgttgatctcgttcttactgctc |
22565197 |
T |
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| Q |
201 |
atccaacgcaatcaattcgcaggtctttgct |
231 |
Q |
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| T |
22565198 |
atccaacgcaatcaattcgcaggtctttgct |
22565228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 2 - 204
Target Start/End: Original strand, 32095043 - 32095245
Alignment:
| Q |
2 |
aacttagctgaagaggtccaaattgctcaccgccgaaggattaagttgaaaaagggtgattttgctgatgagaacaatgcaacaacagaatcagatatcg |
101 |
Q |
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| T |
32095043 |
aacttagctgaagaggttcagattgcgcaccgccgaaggaacaagttgaagaagggagattttagggatgagagtaatgcaaccactgaatccgacattg |
32095142 |
T |
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| Q |
102 |
aagaaactattaagagacttgtaggtgaattgaacaagactcctcaggaagtttttgatgcacttaaaaaccagaccgttgatctcgttcttactgctca |
201 |
Q |
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| T |
32095143 |
aggaaactctcaagaaactcgtgtttgacatgaagaaatctcctcaggaagtttttgatgcattgaagaaccagaccgttgatcttgttcttactgctca |
32095242 |
T |
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| Q |
202 |
tcc |
204 |
Q |
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||| |
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| T |
32095243 |
tcc |
32095245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 32614311 - 32614274
Alignment:
| Q |
59 |
gattttgctgatgagaacaatgcaacaacagaatcaga |
96 |
Q |
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| T |
32614311 |
gattttgttgatgagaacaatgcaacaatagaatcaga |
32614274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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