View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14421_low_5 (Length: 655)

Name: NF14421_low_5
Description: NF14421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14421_low_5
NF14421_low_5
[»] chr3 (14 HSPs)
chr3 (16-431)||(5299438-5299853)
chr3 (16-419)||(5250876-5251279)
chr3 (25-429)||(5268772-5269176)
chr3 (16-429)||(4387852-4388259)
chr3 (455-638)||(5299875-5300057)
chr3 (166-292)||(6479025-6479151)
chr3 (165-286)||(8455513-8455634)
chr3 (165-291)||(6519206-6519332)
chr3 (165-286)||(6736849-6736970)
chr3 (165-286)||(6553487-6553608)
chr3 (165-286)||(8590588-8590709)
chr3 (382-432)||(8472589-8472639)
chr3 (163-295)||(5281508-5281640)
chr3 (165-230)||(6948128-6948193)
[»] scaffold0425 (1 HSPs)
scaffold0425 (165-286)||(6526-6647)
[»] chr4 (1 HSPs)
chr4 (196-292)||(41068372-41068468)
[»] chr7 (1 HSPs)
chr7 (371-432)||(6572246-6572307)


Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 431
Target Start/End: Original strand, 5299438 - 5299853
Alignment:
Q  16 tcctcttgctttgctagaaattctaacttctctagcaattctttgatcctagactcaaagggatcagtaaacgatgaaaagaagtcgaataccttgctag 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5299438 tccttttgctttgctagaaattctaacttctctagcaattctttgatcctagactcaaagggatcagtacacgatgaaaagaagtcgaataccttgctag 5299537  T
Q  116 tagaaggttgagaatcaactttcagcttcttgtttggtgtgtaggttgcaatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcacc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5299538 tagaaggttgagaatcaactttcagcttcttgtttggtgtgtaggttgcaatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcacc 5299637  T
Q  216 aagccacttcttcacgtatgagctttggtattgctttgtctccgcttcttcgagtacatggttgatagaattgagtgtaacttgaagtttctctagcagt 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5299638 aagccacttcttcacgtatgagctttggtattgctttgtctccgcttcttcgagtacatggttgatagaattgagtgtaacttgaagtttctgtagcagt 5299737  T
Q  316 gtatcgtcaagtttgcctcgacgaaaatagtctatgaaatcattggaagacaatttctcaagagccacttgaaagaatgatgaaagaaatgctccaccaa 415  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5299738 ttatcgtcaagtttgcctcgacgaaaatagtctatgaaatcattggaagacaatttctcaagagccacttgaaagaatgatgaaagaaatgctccaccaa 5299837  T
Q  416 ccaattctgccatgat 431  Q
    ||||||||||||||||    
T  5299838 ccaattctgccatgat 5299853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 419
Target Start/End: Original strand, 5250876 - 5251279
Alignment:
Q  16 tcctcttgctttgctagaaattctaacttctctagcaattctttgatcctagactcaaagggatcagtaaacgatgaaaagaagtcgaataccttgctag 115  Q
    |||| ||||||||| |||||||||| |||||||||||||||||| |||||||| ||||| |||| ||| || ||||||||||||||||||||||||||||    
T  5250876 tccttttgctttgcaagaaattctagcttctctagcaattctttaatcctagattcaaatggattagtgaaagatgaaaagaagtcgaataccttgctag 5250975  T
Q  116 tagaaggttgagaatcaactttcagcttcttgtttggtgtgtaggttgcaatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcacc 215  Q
    ||||||||||||| ||| |||||||||||||   |||||  |  |||||||||||||| || || || ||  | |||||  ||  ||||||||||||| |    
T  5250976 tagaaggttgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatc 5251075  T
Q  216 aagccacttcttcacgtatgagctttggtattgctttgtctccgcttcttcgagtacatggttgatagaattgagtgtaacttgaagtttctctagcagt 315  Q
    ||||||||||||||||||   |||||||||||||||  ||||||||||||| |  ||||||||||||||||||||||| | | |||||||||| |||||     
T  5251076 aagccacttcttcacgtacatgctttggtattgcttcatctccgcttcttccaacacatggttgatagaattgagtgttattagaagtttctccagcaga 5251175  T
Q  316 gtatcgtcaagtttgcctcgacgaaaatagtctatgaaatcattggaagacaatttctcaagagccacttgaaagaatgatgaaagaaatgctccaccaa 415  Q
     || | |||||||||| || ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5251176 ttaacatcaagtttgcttctacggaaatagtcaatgaaatcattggaagacaatttctcaagagccacttgaaagaatgatgaaagaaacgctccaccaa 5251275  T
Q  416 ccaa 419  Q
    ||||    
T  5251276 ccaa 5251279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 25 - 429
Target Start/End: Original strand, 5268772 - 5269176
Alignment:
Q  25 tttgctagaaattctaacttctctagcaattctttgatcctagactcaaagggatcagtaaacgatgaaaagaagtcgaataccttgctagtagaaggtt 124  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||| |||| ||| || || |||| |||||||||||||||||||||||||||||    
T  5268772 tttgcaagaaattctagcttctctagcaattctttgatcctagactcaaatggattagtgaaagacgaaatgaagtcgaataccttgctagtagaaggtt 5268871  T
Q  125 gagaatcaactttcagcttcttgtttggtgtgtaggttgcaatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccactt 224  Q
    |||| |||| |||| |||||||   |||||| |  |||||||||||||| || || || ||  | |||||  ||  ||||||||||||| ||||||||||    
T  5268872 gagattcaagtttctgcttcttcaatggtgtatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccactt 5268971  T
Q  225 cttcacgtatgagctttggtattgctttgtctccgcttcttcgagtacatggttgatagaattgagtgtaacttgaagtttctctagcagtgtatcgtca 324  Q
    |||||||||   ||||||| | |||||  |||| |||||||| |  ||||||||||||||||||||||| | | ||||||||||||||||  |  | |||    
T  5268972 cttcacgtacatgctttggaactgcttcatctcagcttcttccaacacatggttgatagaattgagtgttattagaagtttctctagcagattgacatca 5269071  T
Q  325 agtttgcctcgacgaaaatagtctatgaaatcattggaagacaatttctcaagagccacttgaaagaatgatgaaagaaatgctccaccaaccaattctg 424  Q
    ||||||| || ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||    
T  5269072 agtttgcttctacggaaatagtcaatgaaatcattggaagacaatttctcaagagccacttgaaaaaatgatgaaagaaatgctccaccaactaactctg 5269171  T
Q  425 ccatg 429  Q
    |||||    
T  5269172 ccatg 5269176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 16 - 429
Target Start/End: Complemental strand, 4388259 - 4387852
Alignment:
Q  16 tcctcttgctttgctagaaattctaacttctctagcaattctttgatcctagactcaaagggatcagtaaacgatgaaaagaagtcgaataccttgctag 115  Q
    |||| |||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||| | | || ||||||||||||| ||||||||||||||    
T  4388259 tccttttgcttcgcaagaaattctaacttctctagcaattctttgatcctagattcaaatggattaatgaaagatgaaaagaagttgaataccttgctag 4388160  T
Q  116 tagaaggttgagaatcaactttcagcttcttgtttggtgtgtaggttgcaatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcacc 215  Q
    |||||||||      ||| |||| |||||||   |||||  |  |||||||||||||| || || || ||  | |||||  ||  ||||||||||||| |    
T  4388159 tagaaggtt------caaatttctgcttcttcaatggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcattatgtttaagatcatc 4388066  T
Q  216 aagccacttcttcacgtatgagctttggtattgctttgtctccgcttcttcgagtacatggttgatagaattgagtgtaacttgaagtttctctagcagt 315  Q
    |||||||||||||||| |   ||||||||| |||||  ||||||||||||| |  ||| ||||||||||||||||||| | | |||||||||||||||||    
T  4388065 aagccacttcttcacggacatgctttggtactgcttcatctccgcttcttccaacacacggttgatagaattgagtgttattagaagtttctctagcagt 4387966  T
Q  316 gtatcgtcaagtttgcctcgacgaaaatagtctatgaaatcattggaagacaatttctcaagagccacttgaaagaatgatgaaagaaatgctccaccaa 415  Q
     |||| |||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  4387965 ttatcatcaagtttgcttccacgaaaatagtcaatgaaatcattggaagacaatttctcaagagccacctgaaagaatgatgaaagaaacgctccaccaa 4387866  T
Q  416 ccaattctgccatg 429  Q
    |||| |||||||||    
T  4387865 ccaactctgccatg 4387852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 455 - 638
Target Start/End: Original strand, 5299875 - 5300057
Alignment:
Q  455 gaattgttgaaattgatgtaagaggttctgtataagattgtaatggaagatgaatcacctaatgacaaattgttattattgaatggagctttattatatt 554  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5299875 gaattgttgaaattgatgtaagaggttctgtataagattgtaatggaagatgaatcacctaatgacaaattgttattattgaatggagctttattatatt 5299974  T
Q  555 gcataatgcttaataagttttttatttaacaaatagagacggctgagtaagtaagtgttccattaatctaagccacctttagtt 638  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5299975 gcataatgcttaataatttttttatttaac-aatagagacggctgagtaagtaagtgttccattaatctaagccacctttagtt 5300057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 166 - 292
Target Start/End: Complemental strand, 6479151 - 6479025
Alignment:
Q  166 atctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctccgcttctt 265  Q
    |||||||| || ||||| ||||||||||| |||||||||||||| | | |||||||||||||||| |||  | ||||||| |||||| |||| |||||||    
T  6479151 atctcatctaatagttggtctgcttcataaacaacatgtttaagtttatcaagccacttcttcacatatatgatttggtactgctttatctctgcttctt 6479052  T
Q  266 cgagtacatggttgatagaattgagtg 292  Q
    | || ||||||||||||||||||||||    
T  6479051 ccagcacatggttgatagaattgagtg 6479025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 165 - 286
Target Start/End: Original strand, 8455513 - 8455634
Alignment:
Q  165 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctccgcttct 264  Q
    ||||||||| || ||||| ||||||||||| |||||||||||||||||| |||||||||||||||| |||  | ||||||| |||||| |||| |||||     
T  8455513 aatctcatctaatagttggtctgcttcataaacaacatgtttaagatcatcaagccacttcttcacatatttgttttggtactgctttatctctgcttcg 8455612  T
Q  265 tcgagtacatggttgatagaat 286  Q
    || ||||| |||||||||||||    
T  8455613 tctagtacttggttgatagaat 8455634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 165 - 291
Target Start/End: Complemental strand, 6519332 - 6519206
Alignment:
Q  165 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctccgcttct 264  Q
    ||||||||| || ||||| ||||||||||| |||||||||||||| ||| |||||||||||||||| |||  | ||||||| |||||   ||| ||||||    
T  6519332 aatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgcttcagctctgcttct 6519233  T
Q  265 tcgagtacatggttgatagaattgagt 291  Q
    || || |||||||||||||||||||||    
T  6519232 tcaagcacatggttgatagaattgagt 6519206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 165 - 286
Target Start/End: Original strand, 6736849 - 6736970
Alignment:
Q  165 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctccgcttct 264  Q
    |||||||||||| ||||| ||||||||||| | |||||||||||| ||| |||||||||||||||| |||  | ||||||| |||||| |||| |||||     
T  6736849 aatctcatccaatagttggtctgcttcataaagaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgctttatctctgcttcg 6736948  T
Q  265 tcgagtacatggttgatagaat 286  Q
    || ||||| |||||||||||||    
T  6736949 tctagtacttggttgatagaat 6736970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 6553608 - 6553487
Alignment:
Q  165 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctccgcttct 264  Q
    ||||||||| || ||||| ||||| ||||| |||||||||||||| ||| |||||||||||||||| |||  | ||||||| |||||| |||| |||||     
T  6553608 aatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgctttatctctgcttcg 6553509  T
Q  265 tcgagtacatggttgatagaat 286  Q
    || ||||| |||||||||||||    
T  6553508 tctagtacttggttgatagaat 6553487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 165 - 286
Target Start/End: Original strand, 8590588 - 8590709
Alignment:
Q  165 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctccgcttct 264  Q
    ||||||||| || ||||| ||||||||||| |||||||||||||| ||| |||||||||||||||| |||  |||| |||| |||||| |||| |||||     
T  8590588 aatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatttgcttcggtactgctttatctctgcttcg 8590687  T
Q  265 tcgagtacatggttgatagaat 286  Q
    || ||||| | |||||||||||    
T  8590688 tccagtacttcgttgatagaat 8590709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 382 - 432
Target Start/End: Original strand, 8472589 - 8472639
Alignment:
Q  382 acttgaaagaatgatgaaagaaatgctccaccaaccaattctgccatgata 432  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  8472589 acttgaaagaatgatgaaagaaatgctccaccaatcaactctgccatgata 8472639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 295
Target Start/End: Original strand, 5281508 - 5281640
Alignment:
Q  163 gcaatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgc-tttgtctccgct 261  Q
    ||||||||||| |||| ||| ||||| ||||| ||| |||||||||||||| ||||||||||||| || |||| ||||| ||| ||| ||||| || |||    
T  5281508 gcaatctcatcgaaaatttggtctgcctcatatacagcatgtttaagatcatcaagccacttctttacatatgtgcttttgtactgcatttgt-tctgct 5281606  T
Q  262 tcttcgagtacatggttgatagaattgagtgtaa 295  Q
    ||||| || || || || |||||||| |||||||    
T  5281607 tcttccagcacttgatttatagaattaagtgtaa 5281640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 6948128 - 6948193
Alignment:
Q  165 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcac 230  Q
    ||||||||| || ||||| ||||| ||||| |||||||||||||| ||| ||||||||||||||||    
T  6948128 aatctcatctaacagttggtctgcctcatagacaacatgtttaagttcatcaagccacttcttcac 6948193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 6647 - 6526
Alignment:
Q  165 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctccgcttct 264  Q
    ||||||||| || ||||| ||||| ||||| |||||||||||||| ||| |||||||||||||||| |||  | ||||||| |||||| |||| |||||     
T  6647 aatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgctttatctctgcttcg 6548  T
Q  265 tcgagtacatggttgatagaat 286  Q
    || ||||| |||||||||||||    
T  6547 tctagtacttggttgatagaat 6526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 292
Target Start/End: Complemental strand, 41068468 - 41068372
Alignment:
Q  196 acaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctccgcttcttcgagtacatggttgatagaattgagtg 292  Q
    |||||||||||||| ||| ||||||| |||||||| |||  ||||||||| || | |  ||| |||||||| |  ||||||||||||||||||||||    
T  41068468 acaacatgtttaagttcatcaagccaattcttcacatatatgctttggtactgttatagctctgcttcttccaacacatggttgatagaattgagtg 41068372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 432
Target Start/End: Complemental strand, 6572307 - 6572246
Alignment:
Q  371 tctcaagagccacttgaaagaatgatgaaagaaatgctccaccaaccaattctgccatgata 432  Q
    |||||||||  ||||||||||| || ||||||||||||||| ||| ||  ||||||||||||    
T  6572307 tctcaagagtgacttgaaagaacgacgaaagaaatgctccagcaatcagctctgccatgata 6572246  T

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