View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14421_low_6 (Length: 621)

Name: NF14421_low_6
Description: NF14421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14421_low_6
NF14421_low_6
[»] chr4 (13 HSPs)
chr4 (360-601)||(832006-832247)
chr4 (16-305)||(832311-832604)
chr4 (147-203)||(10464584-10464640)
chr4 (366-423)||(6388207-6388264)
chr4 (162-203)||(10482487-10482528)
chr4 (366-442)||(10464217-10464293)
chr4 (366-442)||(10475155-10475231)
chr4 (147-203)||(10475519-10475575)
chr4 (147-202)||(8443169-8443223)
chr4 (169-203)||(10468348-10468382)
chr4 (366-423)||(6372412-6372469)
chr4 (366-423)||(11971028-11971085)
chr4 (366-442)||(10482129-10482205)
[»] chr7 (1 HSPs)
chr7 (366-423)||(13416957-13417014)
[»] chr2 (2 HSPs)
chr2 (370-423)||(554443-554496)
chr2 (389-444)||(25377020-25377075)
[»] chr8 (1 HSPs)
chr8 (366-445)||(42846471-42846551)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-126; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 360 - 601
Target Start/End: Complemental strand, 832247 - 832006
Alignment:
Q  360 caagactccttcatttgccatatcataagatgggttttctcaaaatcatgacaaaaacaaagactttccctcaaaaccacaagttcaattggcttgtaac 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  832247 caagactccttcatttgccatatcataagatgggttttctcaaaatcatgacaaaaacaaagactttccctcaaaaccacaagttcaattggcttgtaac 832148  T
Q  460 agctgagtgtatatatgtgtctgtggacagatcaagtgaaataatcacatagtcctcgtcagcaataaacctatgatccaaatcaaaatatcctgaatta 559  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  832147 agctgagtgtatgtatgtgtctgtggagagatcaagtgaaataatcacatagtcctcgtcagtaataaacctatgatccaaatcaaaatatcctgaatta 832048  T
Q  560 gagtaatcacgaagagccaaccagttaataataccattcaaa 601  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  832047 gagtaatcacgaagagccaaccagttaataataccattcaaa 832006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 832604 - 832311
Alignment:
Q  16 atatagaaaatatcattatctaagttacaataagcataaataacaagacaatggtcaataaataattactcaacaattaataccgagaagctaattaagc 115  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  832604 atatagaaaatatcatcatctaagttacaataagcataaataacaagaaaatggtcaataaataataactcaacaattaataccgacaagctaattaagc 832505  T
Q  116 agcaaagcaatcacacaatctattattataacaacataaacgaagta--------acatagattcaaacaagtaaaatgtggaagagaaactcactcact 207  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||        ||||||||||||||||| |||||||||||||||||||||||||||    
T  832504 agcaaagcaatcacacaatctattattataacaacaaaaacgaagtaattaacatacatagattcaaacaagaaaaatgtggaagagaaactcactcact 832405  T
Q  208 tttaataaggctgcaccaaactttcaacgtaatactgggcctcataccacatcatacccttacttaattcctccaattctcactactctatcgcctgt 305  Q
    |||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||    |||||||||||||||||||||||||||||||    
T  832404 tttaataaagctgcaccaaactttcaacgtaatactgggcctcggaccacatcatacccttac----ttcctccaattctcactactctatcgcctgt 832311  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 10464640 - 10464584
Alignment:
Q  147 caacataaacgaagtaacatagattcaaacaagtaaaatgtggaagagaaactcact 203  Q
    ||||||||| ||||||| ||| |||| ||||||||| ||||||||||||||||||||    
T  10464640 caacataaatgaagtaatataaattctaacaagtaatatgtggaagagaaactcact 10464584  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 366 - 423
Target Start/End: Complemental strand, 6388264 - 6388207
Alignment:
Q  366 tccttcatttgccatatcataagatgggttttctcaaaatcatgacaaaaacaaagac 423  Q
    ||||||||||||||||| | |  ||| |||| ||||||||||||||||||||||||||    
T  6388264 tccttcatttgccatataacagaatgagtttcctcaaaatcatgacaaaaacaaagac 6388207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 10482528 - 10482487
Alignment:
Q  162 aacatagattcaaacaagtaaaatgtggaagagaaactcact 203  Q
    |||||| |||||||||||||| ||||||||||||||||||||    
T  10482528 aacataaattcaaacaagtaatatgtggaagagaaactcact 10482487  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 10464293 - 10464217
Alignment:
Q  366 tccttcatttgccatatcataagatgggttttctcaaaatcatgacaaaaacaaagactttccctcaaaaccacaag 442  Q
    ||||||||||||||||| | || |||||| || |  ||||||| ||||||||||||||  ||| |||||||||||||    
T  10464293 tccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaagacaatccatcaaaaccacaag 10464217  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 10475231 - 10475155
Alignment:
Q  366 tccttcatttgccatatcataagatgggttttctcaaaatcatgacaaaaacaaagactttccctcaaaaccacaag 442  Q
    ||||||||||||||||| | || |||||| || |  ||||||| ||||||||||||||  ||| |||||||||||||    
T  10475231 tccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaagacaatccatcaaaaccacaag 10475155  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 10475575 - 10475519
Alignment:
Q  147 caacataaacgaagtaacatagattcaaacaagtaaaatgtggaagagaaactcact 203  Q
    ||||||| | ||| ||| ||| |||||||||||||| ||||||||||||||||||||    
T  10475575 caacatacatgaaataatataaattcaaacaagtaatatgtggaagagaaactcact 10475519  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 8443169 - 8443223
Alignment:
Q  147 caacataaacgaagtaacatagattcaaacaagtaaaatgtggaagagaaactcac 202  Q
    ||||||| ||||||||||| | |||||||||||| |||||||||| ||||||||||    
T  8443169 caacatacacgaagtaacaaaaattcaaacaagt-aaatgtggaatagaaactcac 8443223  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 10468382 - 10468348
Alignment:
Q  169 attcaaacaagtaaaatgtggaagagaaactcact 203  Q
    |||||||||||||| ||||||||||||||||||||    
T  10468382 attcaaacaagtaatatgtggaagagaaactcact 10468348  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 423
Target Start/End: Complemental strand, 6372469 - 6372412
Alignment:
Q  366 tccttcatttgccatatcataagatgggttttctcaaaatcatgacaaaaacaaagac 423  Q
    ||||||||||||||||| |||| |||||||| |||| | | || ||||||||||||||    
T  6372469 tccttcatttgccatataataaaatgggtttcctcatagttattacaaaaacaaagac 6372412  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 423
Target Start/End: Original strand, 11971028 - 11971085
Alignment:
Q  366 tccttcatttgccatatcataagatgggttttctcaaaatcatgacaaaaacaaagac 423  Q
    ||||||||||||||||| | || ||| ||||  |||||||||||| ||||||||||||    
T  11971028 tccttcatttgccatataacaaaatgagtttgttcaaaatcatgagaaaaacaaagac 11971085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 10482205 - 10482129
Alignment:
Q  366 tccttcatttgccatatcataagatgggttttctcaaaatcatgacaaaaacaaagactttccctcaaaaccacaag 442  Q
    ||||||||||||||||| | || ||  |||| |||| ||||||||| |||||||||||  ||| |||||||| ||||    
T  10482205 tccttcatttgccatataacaaaataagtttcctcataatcatgaccaaaacaaagacaatccatcaaaaccgcaag 10482129  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 366 - 423
Target Start/End: Original strand, 13416957 - 13417014
Alignment:
Q  366 tccttcatttgccatatcataagatgggttttctcaaaatcatgacaaaaacaaagac 423  Q
    ||||||||||||||||| |||| || |||||||| |||||||| | ||||||||||||    
T  13416957 tccttcatttgccatatgataaaataggttttcttaaaatcataagaaaaacaaagac 13417014  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 370 - 423
Target Start/End: Complemental strand, 554496 - 554443
Alignment:
Q  370 tcatttgccatatcataagatgggttttctcaaaatcatgacaaaaacaaagac 423  Q
    ||||||||||||| ||||||||||||  ||||||||| ||| ||||||||||||    
T  554496 tcatttgccatataataagatgggttccctcaaaatcgtgagaaaaacaaagac 554443  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 444
Target Start/End: Complemental strand, 25377075 - 25377020
Alignment:
Q  389 atgggttttctcaaaatcatgacaaaaacaaagactttccctcaaaaccacaagtt 444  Q
    |||| ||| ||| ||||||||||||||||||||||  ||| |||||||||||||||    
T  25377075 atggttttcctccaaatcatgacaaaaacaaagacagtccgtcaaaaccacaagtt 25377020  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 445
Target Start/End: Original strand, 42846471 - 42846551
Alignment:
Q  366 tccttcatttgccatatcataagatgggttttctcaaaatcatg-acaaaaacaaagactttccctcaaaaccacaagttc 445  Q
    |||||||||||||| || | || |||||||| |||||||||||| | |||||  |||| | ||||||||||||||||||||    
T  42846471 tccttcatttgccaaataacaaaatgggtttcctcaaaatcatgaaaaaaaattaagagtgtccctcaaaaccacaagttc 42846551  T

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