View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14422_high_4 (Length: 238)
Name: NF14422_high_4
Description: NF14422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14422_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 13871579 - 13871375
Alignment:
| Q |
16 |
attggcttgccacaaactcttgtcagtatagccgtaggatgtaaaacaaacaaactattaatctctatctatgggaagagtaacatttgatgattcaacc |
115 |
Q |
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| T |
13871579 |
attggcttgccacaaactcttgtcggtatagccgtaggatgtaaaacaaacaaactattaatct--atctatgggaagagtaacatttgatgattcaaac |
13871482 |
T |
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| Q |
116 |
tctttaaagtgtattgaagagaatataatgcaaatgagccaatagtgtgacttatattccaggacttacggattactaacaaacaagttatcttaactaa |
215 |
Q |
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| T |
13871481 |
tctttaaagtgtattgaagagaatataatgcaaatgtgccaatagtgtgacttatattccaggacttacggattactaacaaacaagatatcttaactaa |
13871382 |
T |
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| Q |
216 |
atgtatt |
222 |
Q |
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||||||| |
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| T |
13871381 |
atgtatt |
13871375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 12957481 - 12957527
Alignment:
| Q |
176 |
aggacttacggattactaacaaacaagttatcttaactaaatgtatt |
222 |
Q |
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| T |
12957481 |
aggacttactgattactaacaaacaagttatcttaactaaatgtatt |
12957527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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