View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14422_low_1 (Length: 678)
Name: NF14422_low_1
Description: NF14422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14422_low_1 |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 18 - 659
Target Start/End: Original strand, 13715470 - 13716109
Alignment:
| Q |
18 |
agatgataggtcgagaggttgatttatattgttgctgagccaattccaaaattgtgaggtgacagagcaattaaaaataatgtgctcagctgtcatatag |
117 |
Q |
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| T |
13715470 |
agatgataggtcgagaggttgatttatattgttgctgagccaattccaaaattgtgaggtgacagagcaattaaaaataatgtgctcagctgtcatatag |
13715569 |
T |
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| Q |
118 |
cagaagcaacaagcagagaccaaaatacaccctcttattcgtaactggtcattagttagaagcttatgatgagccaatctccaaacaaatgaaggcccga |
217 |
Q |
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| T |
13715570 |
cagaagcaacaaacagagaccaaaatacaccctcttattcgtaactggtcatcagttagaagcttttgatgagccaatctttaaacaaatgaaggcccga |
13715669 |
T |
|
| Q |
218 |
nnnnnnnnnnnnnnnnatgtggggggtggggacaaaggcatttcaaataaacttgcaccaactcaacttgattcgtattcagaaaatcataagctaactt |
317 |
Q |
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| T |
13715670 |
gtgtgtgtgtgtgt--atgtggggggtggggacaaaggcattccaaataaacttgcaccaactcaacttgattcgtattcagaaaatcataagctaactt |
13715767 |
T |
|
| Q |
318 |
gttggacaaatccccatccatagagtgaagccaatgcaaacagtcattttgaggttcaatgcaaagagtcgtattttgtatcagcaccgtcaaagtagga |
417 |
Q |
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| T |
13715768 |
gttagacaaatccccatccatagagtgaagccaatgcaaacagtcattttgaggttcaatgcaaagagtggtattttgtatcagcaccgtcaaagtagga |
13715867 |
T |
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| Q |
418 |
tatttacggctaatgtatgagggaatctgccattgttggtgcacaatgtaatatgacaccttcatgttcagctaagcatgcaaatgagtaggaatgctta |
517 |
Q |
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| T |
13715868 |
tatttagggctaatgtatgagggaatctgccattgttggtgcacgatgtaatatgacaccttcatgttcagctaagcatgcaaatgagtaggaatgctta |
13715967 |
T |
|
| Q |
518 |
gagactgcaccaatggctcaccgggccacatgtccttccaaaagagaacattctccacattccctatgttccaattagaattattcaacacaggctgaac |
617 |
Q |
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| T |
13715968 |
gagacttcaccaatggctcaccgggccacatgtgcttccaaaagagaacattctccacattccctatgttccaattagaattattcaacacaggctgaac |
13716067 |
T |
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| Q |
618 |
aaaaggcttaagccgaagccaaatggaagaagcaatatgatg |
659 |
Q |
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| T |
13716068 |
aaaaggcttaagccgaagccaaatggaagaagcaatatgatg |
13716109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 117; Significance: 3e-59; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 381 - 661
Target Start/End: Original strand, 36099 - 36379
Alignment:
| Q |
381 |
aagagtcgtattttgtatcagcaccgtcaaagtaggatatttacggctaatgtatgagggaatctgccattgttggtgcacaatgtaatatgacaccttc |
480 |
Q |
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| T |
36099 |
aagagtggtattttgtatctgaaccgtcaaggtaggatatttagaactaatgtaggtgggaatccgccattgatggtgcagaatgtaatctgacaccttc |
36198 |
T |
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| Q |
481 |
atgttcagctaagcatgcaaatgagtaggaatgcttagagactgcaccaatggctcaccgggccacatgtccttccaaaagagaacattctccacattcc |
580 |
Q |
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| T |
36199 |
atgtccagctgagcatgaaaatgtgaaggaatgctgagagactgcaccaacggctcacccaaccacctgtccttccaaaagagaacattctccccattcc |
36298 |
T |
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| Q |
581 |
ctatgttccaattagaattattcaacacaggctgaacaaaaggcttaagccgaagccaaatggaagaagcaatatgatgtt |
661 |
Q |
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| T |
36299 |
caatattccaagtagaattaactaacaccaactgcacaaaagacttaagccgaggccaaatcgaataagtagtatgatgtt |
36379 |
T |
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