View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14422_low_2 (Length: 607)
Name: NF14422_low_2
Description: NF14422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14422_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 3 - 593
Target Start/End: Complemental strand, 10227649 - 10227056
Alignment:
| Q |
3 |
caccagacctgacatgacatatgttgttggagtttgaggaa-gatatcagagtaatccaagtgttgaccactagaaagcttagaagaaaatgatgagata |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10227649 |
caccagacctgacatgacatatgttgttggagttcgaggaaagatatcagagtaatccaagtgttgaccactagaaagcttagaagaaaatgatgagata |
10227550 |
T |
|
| Q |
102 |
atcttcaaggaataaagaatttcatgctcatgtacaaaagaacagattacacacacaatttggatggaaattgttgtctggtttggctaatttgattata |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10227549 |
-tcttcaaggaataaagaatttcatgctcatgtacaaaagaacagattacacacacaatttggatggaaattgttgtctggtttggctaatttgattata |
10227451 |
T |
|
| Q |
202 |
agaagtttatcattaacatattgt---aataaacnnnnnnnttctagattttcataccaccggattggccaatccgtaggtgtaaatgcaattttcaagt |
298 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10227450 |
agaagtttaacattaacatattgttgtaataaacaaaaaatttctagattttcataccaccggattggccaatccgtaggtgtaaatgcaattttcaagt |
10227351 |
T |
|
| Q |
299 |
tttttacatctccaaattgaccaattttgtcgtctaaaatgtttactcaattttttcagcccaaaggtgtaaaatgcagnnnnnnnaatttcaatgcctt |
398 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10227350 |
tttttacatctccaaattgaccaattttgacgtctaaaatgtttactcaattttttcagcccaaaggtgtaaaatgcagtttttttaatttcaatgcctt |
10227251 |
T |
|
| Q |
399 |
caaattgacaaattcaagtgtgtaaaatatttagggttcgaaattaattttgcataatcgagtgcaatttaagggccggtttaaattattttgcatgagt |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10227250 |
caaattgacaaattcaagtgtgtaaaatatttggggttcgaaattaattttgcataatcgagtgcaatttaagggccgttttaaattattttgcatgagt |
10227151 |
T |
|
| Q |
499 |
ttgagcttctgcaatatgcttttgtgcttctataatatcatcataatggatttaagagtctgaatattttgatgatctcataatgggtacctatg |
593 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10227150 |
ttgagcttctgcaatatgcttttgtgcttctataatatcataataatggatttaagagtctgaatattttgatgatctcataatgggtacctatg |
10227056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 591
Target Start/End: Original strand, 14743426 - 14743479
Alignment:
| Q |
538 |
atcataatggatttaagagtctgaatattttgatgatctcataatgggtaccta |
591 |
Q |
| |
|
||||| |||| || |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14743426 |
atcatgatgggttcaagagtctgaatattttgatgatctcataatgggaaccta |
14743479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 1752070 - 1752015
Alignment:
| Q |
92 |
tgatgagataatcttcaaggaataaagaatttcatgctcatgtacaaaagaacagat |
148 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||| |||||||||||| |||||||| |
|
|
| T |
1752070 |
tgatgagata-tcttcaaggaacaaagaatttcatcctcatgtacaaatgaacagat |
1752015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University