View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14422_low_3 (Length: 510)
Name: NF14422_low_3
Description: NF14422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14422_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 7 - 507
Target Start/End: Complemental strand, 37821917 - 37821417
Alignment:
| Q |
7 |
ccaaagagaaattctcctaaagtcgtaggttagaccccttgaccctagggcccgacctggaggtagcgaaaacaaggagcattatagatgaaggttttac |
106 |
Q |
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|||||| ||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37821917 |
ccaaagggaaattctcctaaagtcatagtttagaccccttgacccttgggcccgacctggaggtagcgaaaacaaggagcattatagatgaaggttttac |
37821818 |
T |
|
| Q |
107 |
acagagaaattaaaatgagtatatattgatcctaaatataaataattctgtttattatcaaactcttggtaacttgtgttaggacatattacaaatttag |
206 |
Q |
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| T |
37821817 |
acagagaaattaaaatgagtatatattgatcctaaatataaataattctgtttattatcaaactcttggtaacttgtgttaggacatattacaaatttag |
37821718 |
T |
|
| Q |
207 |
cagtnnnnnnnngtaaggaaatatactcaccattattattcaaaaatatcaatgtgaaagtatacatgcatataattttaatcatatgaaacagttcttt |
306 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
37821717 |
cagtaaaaaaaagtaaggaaatatactcaccattattattcaaaaatatcaatgtgaaaatatacatgcatataattttaatcatatgaaacagtttctt |
37821618 |
T |
|
| Q |
307 |
caaatgtttaattgttgaatttttcctaaagtattgttgctatttaatgatacaccagaagcaacaattggtatcttcttgtcatgctccttttggatgc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37821617 |
caaatgtttaattgttgaatttttcctaaagtattgttgccatttaatgatacaccagaagcaacaattggtatcttcttgtcatgctccttttggatgc |
37821518 |
T |
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| Q |
407 |
aagtcaaagatgagttggcaatgggaattgaatcacattgaatagagtcttttgcagacaccatttcattcatattatcgacctctcttgctcctttgct |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| |
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| T |
37821517 |
aagtcaaagatgagttggcaatgggaattgaatcacattgaatagagtcttttgcagacactatttcattcatattatccacctctcttgcttctttgct |
37821418 |
T |
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| Q |
507 |
t |
507 |
Q |
| |
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| T |
37821417 |
t |
37821417 |
T |
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