View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14422_low_4 (Length: 431)
Name: NF14422_low_4
Description: NF14422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14422_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 9 - 415
Target Start/End: Complemental strand, 12003464 - 12003058
Alignment:
| Q |
9 |
agcatagggccaaccatcaactttatcggcaagactttgagaaaatcttttgcagtgtaatttgatgtgtgaatcccaatgaaaactaagagtgatgagg |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12003464 |
agcataaggccaaccatcaactttatcggcaagactttgagaaaatcttttgcagtgtaatttgatgtgtgaatcccaatgaaaactaagagtgatgagg |
12003365 |
T |
|
| Q |
109 |
cagaagcaatgatagataatgcatctgctaagagaaaaatattaaatattttgtaatgcaagaagataggtgacccagtattttgattgagtccacccgg |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
12003364 |
cagaagcaatgatagataatgcatctgctaagagaaaaatattaaatattttgtaatgcaagaaggtaggtgacccagtattttgattgagtccacctgg |
12003265 |
T |
|
| Q |
209 |
gatagtgaagactgcagcaaacatgatagtaatgatgatataagccactcctatataagatgtagctgtctcttttgtcaatttctctccagcttttaat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12003264 |
gatagtgaagactgcagcaaacatgatagtaatgatgatataagccactcctatataagatgtagctgtctcttttgtcaatttctctccagcttttaat |
12003165 |
T |
|
| Q |
309 |
agctcctcatggttttccgtgaataagtcataaggcttcttaccatatttatttttgttttccttcatagtcggatgcacaattttctccaccgcctgca |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12003164 |
agctcctcatggttttccgtgaataagtcataaggcttcttaccatatttatttttgttttccttcatagtcggatgcacaattttctccaccgcctgca |
12003065 |
T |
|
| Q |
409 |
taaatgt |
415 |
Q |
| |
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||||||| |
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| T |
12003064 |
taaatgt |
12003058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 27 - 408
Target Start/End: Original strand, 12090664 - 12091042
Alignment:
| Q |
27 |
aactttatcggcaagactttgagaaaatcttttgcagtgtaatttgatgtgtgaatcccaatgaaaactaagagtgatgaggcagaagcaatgatagata |
126 |
Q |
| |
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||||| || |||||||| ||||| |||||| ||||| | || |||||| ||||| |||||||| |||| ||| | |||||||| |||||||||| |
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| T |
12090664 |
aacttcataggcaagaccttgaggaaatctattgcatggcaacgcgatgtgagaatcgaaatgaaaaacaagactgaagtggcagaagtgatgatagata |
12090763 |
T |
|
| Q |
127 |
atgcatctgctaagagaaaaatattaaatattttgtaatgcaagaagataggtgacccagtattttgattgagtccacccgggatagtgaagactgcagc |
226 |
Q |
| |
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| ||| ||||||||||| || |||||| | || | || |||| |||| |||| |||||| ||| ||| ||||||| | ||||||||| ||||||| |
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| T |
12090764 |
ccgaatcagctaagagaaacattttaaatgtattttgatccaaggagatgggtgtcccagt---ttggttgtttccacccagaatagtgaaggctgcagc |
12090860 |
T |
|
| Q |
227 |
aaacatgatagtaatgatgatataagccactcctatataagatgtagctgtctcttttgtcaatttctctccagcttttaatagctcctcatggttttcc |
326 |
Q |
| |
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|||||||||||||| || | | ||||||| |||||||| | |||||||| ||||||||| |||| ||||||||||| | ||||||||||||| |||| |
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| T |
12090861 |
aaacatgatagtaaggacaagagaagccacagctatataacaagtagctgtgtcttttgtccatttttctccagctttcactagctcctcatggctttcg |
12090960 |
T |
|
| Q |
327 |
gtgaataagtcataaggcttcttaccatatttatttttgttttcctt-catagtcggatgcacaattttctccaccgcctgca |
408 |
Q |
| |
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| T |
12090961 |
aagaatacatcataaggtttcttaccatcctcatttttggcttccttgcaca-tgggatgcacaacttcctccaccgcctgca |
12091042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 354
Target Start/End: Original strand, 12111712 - 12112030
Alignment:
| Q |
36 |
ggcaagactttgagaaaatcttttgcagtgtaatttgatgtgtgaatcccaatgaaaactaagagtgatgaggcagaagcaatgatagataatgcatctg |
135 |
Q |
| |
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|||||||| ||||| |||||| ||||| | || | |||||| ||||| |||||||| |||| ||| | ||| |||| |||||||||| | ||| | |
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| T |
12111712 |
ggcaagaccttgaggaaatctattgcatggcaactcgatgtgagaatcgaaatgaaaaacaagactgaagtggcggaagtgatgatagataccgaatcag |
12111811 |
T |
|
| Q |
136 |
ctaagagaaaaatattaaatattttgtaatgcaagaagataggtgacccagtattttgattgagtccacccgggatagtgaagactgcagcaaacatgat |
235 |
Q |
| |
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|||||||||| || |||||| | || | || ||| |||| |||| ||| | | ||||||| |||||| |||||||| ||| |||| |||||||| | |
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| T |
12111812 |
ctaagagaaacattttaaatgtattttgatctaaggagatgggtgtaccaatttgttgattgtttccaccagggatagtaaaggctgctgcaaacataac |
12111911 |
T |
|
| Q |
236 |
agtaatgatgatataagccactcctatataagatgtagctgtctcttttgtcaatttctctccagcttttaatagctcctcatggttttccgtgaataag |
335 |
Q |
| |
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||||| || || | ||||||| |||||||| | ||||||| ||||||||| |||||||| ||||||| | |||||| |||||| |||| |||||| |
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| T |
12111912 |
agtaaggacgagagaagccacagctatataacaactagctgtgtcttttgtccatttctctgcagctttcactagctcttcatggctttcaatgaataca |
12112011 |
T |
|
| Q |
336 |
tcataaggcttcttaccat |
354 |
Q |
| |
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||||||||||||||||||| |
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| T |
12112012 |
tcataaggcttcttaccat |
12112030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 373
Target Start/End: Original strand, 12084841 - 12084964
Alignment:
| Q |
250 |
aagccactcctatataagatgtagctgtctcttttgtcaatttctctccagcttttaatagctcctcatggttttccgtgaataagtcataaggcttctt |
349 |
Q |
| |
|
||||||| |||||||| | ||||||| ||||||||| |||||||||| ||||| | |||||| |||||| |||| |||| | |||||||||||||| |
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| T |
12084841 |
aagccacagctatataacaactagctgtgtcttttgtccatttctctccggctttcactagctcttcatggctttcaatgaaaacatcataaggcttctt |
12084940 |
T |
|
| Q |
350 |
accatatttatttttgttttcctt |
373 |
Q |
| |
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||||| | ||||||| ||||||| |
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| T |
12084941 |
accatcctcatttttggtttcctt |
12084964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 354
Target Start/End: Original strand, 12008732 - 12008824
Alignment:
| Q |
262 |
tataagatgtagctgtctcttttgtcaatttctctccagcttttaatagctcctcatggttttccgtgaataagtcataaggcttcttaccat |
354 |
Q |
| |
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|||||||||| ||||| ||||||| | |||||||||| |||| | ||||||||| ||| |||| |||||| ||||||||||||||||||| |
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| T |
12008732 |
tataagatgttgctgtgtcttttgcccatttctctccttctttcactagctcctcgtggctttcaatgaatatctcataaggcttcttaccat |
12008824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 354
Target Start/End: Original strand, 11919302 - 11919391
Alignment:
| Q |
265 |
aagatgtagctgtctcttttgtcaatttctctccagcttttaatagctcctcatggttttccgtgaataagtcataaggcttcttaccat |
354 |
Q |
| |
|
||||||| ||||||||||||| | ||||||||||| ||| | ||| || || |||||||| ||||||| ||| ||||||| ||||||| |
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|
| T |
11919302 |
aagatgttgctgtctcttttgcccatttctctccaagtttcattagttcatcgtggttttcggtgaatatttcaaaaggctttttaccat |
11919391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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