View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14423_low_1 (Length: 568)
Name: NF14423_low_1
Description: NF14423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14423_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 7 - 552
Target Start/End: Original strand, 4968750 - 4969304
Alignment:
| Q |
7 |
agaagcaaagggatgattgagagagagaaa-gaaatatatatcattctgacggtgtaacataacatcattcatccgacgattcaaataacttgtccatcg |
105 |
Q |
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| T |
4968750 |
agaagcaaagagatgattgagagagagaaaagaaatatatatcattctgatggtgtaacataacatcatttatcggacgattcaaataacttgtccatcg |
4968849 |
T |
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| Q |
106 |
tgagagacttgcttcacttgcccaccctagcatccgcgccaagttcactttgttttgaaacataacttctttc----------aattctttgtaatttca |
195 |
Q |
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| T |
4968850 |
tgagagacttgcttcacttgcccaccctagcatcggcgccaagttcactttgttttgaaacataacttctttcggttcagttcaattctttgtaatttca |
4968949 |
T |
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| Q |
196 |
attcctcatgtttaacatccaaatcgttgaacatttctttaaaccaaaacattttccaaaactatcaatacataccatcacacacataaggtttttcaga |
295 |
Q |
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| T |
4968950 |
attcctcatatttaacatccaaatcgttgaacatttctttaaaccaaaacattttccaaaactatcaatacacaccatcacacacataaggtttttcaga |
4969049 |
T |
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| Q |
296 |
ttatc--ataacttgtcttgtctaagattcaatattcgtaatgattaaataatcttttgatgttggtttggtgcacttcacaattaaccaatttttcgag |
393 |
Q |
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| T |
4969050 |
ttatcagataacttgtcttgtctaagattcaatattcacaatgattaaataatcttttgatgttggtttggtgcacttcacaattaaccaatttttcgag |
4969149 |
T |
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| Q |
394 |
atcaaagaacaacaaccnnnnnnnnnnctttctttctttgaatactctggtgtcgtggagtttcgttggatgcttatcaactatctaattatctaatatc |
493 |
Q |
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| T |
4969150 |
atcaaagaacaacaacc----ttttttctttctttctttgaatactctggtgtcatggagtttcgttggatgcttatcaactatctaattatctaatgtc |
4969245 |
T |
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| Q |
494 |
atgtcactttcttaaaataaatttaaattttgaactaattttgcctagaagttactaat |
552 |
Q |
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| T |
4969246 |
gtgtcactttcttaaaataaatttaaattttgaactaattttgcctagaagtcactaat |
4969304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 551
Target Start/End: Complemental strand, 31578515 - 31578467
Alignment:
| Q |
503 |
tcttaaaataaatttaaattttgaactaattttgcctagaagttactaa |
551 |
Q |
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| T |
31578515 |
tcttaaaataaatttaaattttaaattgattttgcctagaaggtactaa |
31578467 |
T |
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