View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14423_low_2 (Length: 411)
Name: NF14423_low_2
Description: NF14423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14423_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 33536248 - 33536645
Alignment:
| Q |
1 |
ggtttaattgttaaaggttaacaaaagaaatctacatggctagcccggtattgtaattggcttcccaagtagcgcacgttgatgtgcatttagatgtagt |
100 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
33536248 |
ggtttaattgttaaaggttaaaaaaaggaatctacatggctagcccggtattgtaattggcttcccaagtagtgaacgttgatgtgcatttagatgtagt |
33536347 |
T |
|
| Q |
101 |
tgagcagtaatttccggactctcaggaggaggaggaggttccccgatctccatatgcgactactacgctctcatcttcagtgacgcatgaaaatgtacat |
200 |
Q |
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||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
33536348 |
tgagcagtaatttccggactcccaggaggaggaggtggttccccgatctccagatgcgactgctacgctctcatcttcagtgacgcatgaaaatgtgtat |
33536447 |
T |
|
| Q |
201 |
aatttgtctgttgaattggtttccttcggtactggtagggaggagtcactgattcagcaatttgtagcgcacgatgacgtgcaacatagctctcctctcg |
300 |
Q |
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| T |
33536448 |
agtttgtctgttgaattgatttccttcggtattggtcgggaggagtcaccgattcagcaatttgtagcgcacgatgacgtacaacatagctctcctctcg |
33536547 |
T |
|
| Q |
301 |
atcctcttattccccggtccatccctgttgagacaaaattggcatcttaaatggagaggctagatcagaatgaacccccgtcaattgtaacacaggtt |
398 |
Q |
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| T |
33536548 |
atcctcttattcccccgtccatccctgttgagacagaattggtatctgaaatggagaggctagatcagaatgaacccccgtcaactgtaacacaggtt |
33536645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 93 - 395
Target Start/End: Complemental strand, 28784439 - 28784138
Alignment:
| Q |
93 |
gatgtagttgagcagtaatttccggactctcaggaggaggaggaggttccccgatctccatatgcgactactacgctctcatcttcagtgacgcatgaaa |
192 |
Q |
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| T |
28784439 |
gatgtagtagagcagttaagtccggactcccgtgaggaggaggtggttccccggtctccggatgcgactactacgctctcatcctcagtgacgcatgaaa |
28784340 |
T |
|
| Q |
193 |
atgtacataatttgtctgttgaattggtttccttcggtactggtagggaggagtcactgattcagcaatttgtagcgcacgatgacgtgcaacatagctc |
292 |
Q |
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|||| |||| ||||||||||||||| ||||||| | | || |||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| |
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| T |
28784339 |
atgtgcatagtttgtctgttgaattagtttcctccacttctagtagggaggagtcactgattcaacaatttgtagcgcacgatgatatgcaagatagctc |
28784240 |
T |
|
| Q |
293 |
tcctctcgatcctcttattccccggtccatccctgttgagacaaaattggcatcttaaatggagaggctagatcagaatgaacccccgtcaattgtaaca |
392 |
Q |
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||||||| |||||||||| | | || |||||| |||||||| |||||| || | |||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
28784239 |
tcctctcagtcctcttattgcgcaatctatcccttttgagacataattggtatttgaaatggagaggctagatccaaatgaacccccgtc-attgtaaca |
28784141 |
T |
|
| Q |
393 |
cag |
395 |
Q |
| |
|
||| |
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|
| T |
28784140 |
cag |
28784138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 211 - 396
Target Start/End: Original strand, 27505431 - 27505616
Alignment:
| Q |
211 |
ttgaattggtttccttcggtactggtagggaggagtcactgattcagcaatttgtagcgcacgatgacgtgcaacatagctctcctctcgatcctcttat |
310 |
Q |
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|||||||||||||| || | |||||||||||||||||| ||||||||||||||||||||| ||| | |||||||||||||| | ||| | ||||||||| |
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| T |
27505431 |
ttgaattggtttccaccgcttctggtagggaggagtcaccgattcagcaatttgtagcgcatgataaagtgcaacatagctcccatcttggtcctcttat |
27505530 |
T |
|
| Q |
311 |
tccccggtccatccctgttgagacaaaattggcatcttaaatggagaggctagatcagaatgaacccccgtcaattgtaacacagg |
396 |
Q |
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| ||| |||||| ||||||||| | |||||| | | ||||||||||||||||| |||||||||||| |||| |||||||||||| |
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| T |
27505531 |
tgcccagtccattcctgttgaggcggaattggtgtatgaaatggagaggctagattagaatgaacccctgtcacttgtaacacagg |
27505616 |
T |
|
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