View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14423_low_4 (Length: 382)
Name: NF14423_low_4
Description: NF14423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14423_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 2 - 364
Target Start/End: Original strand, 10793436 - 10793799
Alignment:
| Q |
2 |
ttctatctgttttgattttcttttactcttatggaggattttggttttaacagcc-tcttctttacacttttctctttcatttaatatatgattatgata |
100 |
Q |
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| T |
10793436 |
ttctatttgttttgattttctcttgctcttatggaggattttggttttgtccgccctcttctttacacttttctctttcatttaatatatgattgtgata |
10793535 |
T |
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| Q |
101 |
ctgcagtgggaggtccatttgcatctcatttttcccttnnnnnnngtagtgtatctttatattgcattggatgccacatcaatttgtttttatgtttaaa |
200 |
Q |
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| T |
10793536 |
ttggagtaggaggtccatttgcatctcatttttcccttaaaaaaagtagtgtatctttatattgcattggatgccacatcaatttgttattatgtttaaa |
10793635 |
T |
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| Q |
201 |
taataaactcaattaacactaccttcttaggccctaacaattgagacaaaactaaattatagtttgataataaggagaattagttgggataataagaagg |
300 |
Q |
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| T |
10793636 |
taacaaactcaattaacactaccttcttaggccctaacaattgagacaaaactaaattatagtatgataataaggagaattagttgggataataagaagg |
10793735 |
T |
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| Q |
301 |
ttaattcaataataagcaagtgatgtatgactttgatgactcaaaagctccaaatgcgggtaat |
364 |
Q |
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| T |
10793736 |
ttaattcaataataagcaagtgatgtatgactttgatgactcaaaagctccaaatgcgggtaat |
10793799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 1704140 - 1704246
Alignment:
| Q |
1 |
tttctatctgttttgattttcttttactcttatggaggattttggtttt-aacagcctcttctttacacttttctctttcatttaatatatgattatgat |
99 |
Q |
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| T |
1704140 |
tttctatttgttttggttctcttttgctcttatggaagattttggttttgtccctcctctactttgcactattttctttcgtttaatatatgtttaaggt |
1704239 |
T |
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| Q |
100 |
actgcag |
106 |
Q |
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||||||| |
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| T |
1704240 |
actgcag |
1704246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 42110212 - 42110128
Alignment:
| Q |
9 |
tgttttgattttcttttactcttatggaggattttggtttt--aacagcctcttctttacacttttctctttcatttaatatatg |
91 |
Q |
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||||||| ||||||||| || |||||||||||||||||||| | |||||||||| |||||| |||||| ||||||||||| |
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| T |
42110212 |
tgttttggttttcttttgcttttatggaggattttggtttttgtcccccctcttctttctacttttttctttcgtttaatatatg |
42110128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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