View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14423_low_5 (Length: 326)
Name: NF14423_low_5
Description: NF14423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14423_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 510868 - 510550
Alignment:
| Q |
1 |
tccaagtctccatttatctgcctctgctcttcacgttacatcaaacagagaccgttcatgattggaagaaattgacaaacataaaatgatttattttcaa |
100 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
510868 |
tccaagtctccatttatcagtctctgctcttcacgttacatcaaacagagaccgttcatgattggaagaaattgacaaacataaaatgatttattttcga |
510769 |
T |
|
| Q |
101 |
aatactcataacatcataattgaaatgtgtgatatttcatgtgtatatgtttggtaaattcctaccactaaatcaattttttccatatgtttcctttcct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
510768 |
aatactcataacatcataattgaaatgtgtgatatttcatgtgtatatgtttggtaaattcctaccactaaatcaat-ttttccatatgtttcctttcct |
510670 |
T |
|
| Q |
201 |
ttcctttcctctataatattatttcaaattaataaaataaaattgcacatgccttcag----tatatatttcaaaatgtatggaacaaaattaaaaatgc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
510669 |
ttcctttcctctataatattatttcaaattaataaaataaaattgcacatgccttcagtatatatatatttcaaaatgtatggaacaaaattaaaaatgc |
510570 |
T |
|
| Q |
297 |
cactagatatgtattctctg |
316 |
Q |
| |
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|||||||||||||||||||| |
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| T |
510569 |
cactagatatgtattctctg |
510550 |
T |
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