View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14423_low_6 (Length: 292)

Name: NF14423_low_6

Description: NF14423

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14423_low_6

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 186; E-Value: 1e-101

Query Start/End: Original strand, 18 - 292

Target Start/End: Original strand, 45271659 - 45271930

Alignment:

Q	18	tcctctgcttggattaatcaacctaaaaaattttataggcacgaaaaagtgccaccttttttctatgggaagaaaaataaattcatttagacatacacat	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	45271659	tcctctgcttggattaatcaacctaaaaaattttataggcacgaaaaagtgccaccttttttctatgagacgaaaaataaattcatttagacatacacac	45271758	T

Q	118	aaatgaaaaaagtatgaaaaagagaagaattaatcaatatatgtgctttatgtgtgtacgtctaaatga------tttagacttgtgaaccaaccaagtg	211	Q
		\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	45271759	ataa---------atgaaaaagagaagaattaatcaatatatatactttatgtgtgtacatctaaatgaattttatttaggcttgtggaccaaccaagtg	45271849	T

Q	212	tatctcataagaataagatagactattttgaagtttgctataaaggcaatctggttgcattattctaaatatgatcaaata	292	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	45271850	tatctcataagaataagatagactattttgaagtttgctataaaggcaatctggttgcattattctaaatatgatcaaata	45271930	T

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Target: chr3; HSP #2

Raw Score: 31; E-Value: 0.00000003

Query Start/End: Original strand, 108 - 157

Target Start/End: Complemental strand, 12938034 - 12937984

Alignment:

Q	108	acatacacataaatg-aaaaaagtatgaaaaagagaagaattaatcaatat	157	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	12938034	acatacacataaatggaaaaaaatatgaaaaagaaaagaattaattaatat	12937984	T

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