View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14423_low_8 (Length: 290)
Name: NF14423_low_8
Description: NF14423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14423_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 274
Target Start/End: Complemental strand, 24411923 - 24411666
Alignment:
| Q |
12 |
tcatatatgatgggatgtaaatggttatgtttgcaatttttgtatctttattcttttttgaaccgggttagtgttctaacaaaagccatatttcatcaaa |
111 |
Q |
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| T |
24411923 |
tcatataagataagatgtaaatggttatgtttgcaatttttgtatctttattcttttatgaaccggattagtgttctaacaaaaaccgtatttcatcaaa |
24411824 |
T |
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| Q |
112 |
tacaaaataagtttatactattcaagatacggaaaaaggccaagtttatggtgtcgagggagacgcatcttgtaccatgcataaggtcatttagctattg |
211 |
Q |
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| T |
24411823 |
tacaaaataagtttatactattcaagatacggaagaaggccaagtttatggtgtcgagggagacgcatcttgtaccatgcataaggtcatttagctattg |
24411724 |
T |
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| Q |
212 |
ggttgggttaataaagttcattattaaattaaataaaatatgaaaagatttataaatctaatg |
274 |
Q |
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| T |
24411723 |
-----ggttaataaagttcattattaaattaaataaaatatgaaaagatttattaatctaatg |
24411666 |
T |
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Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 24422203 - 24422394
Alignment:
| Q |
12 |
tcatatatgatgggatgtaaatggttatgtttgcaatttttgtatctttattcttttttgaaccgggttagtgttctaacaaaagccatatttcatcaaa |
111 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| || |||||||||||| |
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| T |
24422203 |
tcatataagataagatgtaaatggttatgtttgcaatttttgtatatttattcttttttgaaccgggttagtgtactaacaaaaaccttatttcatcaaa |
24422302 |
T |
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| Q |
112 |
tacaaaataagtttatactattcaagatacggaaaaaggccaagtttatggtgtcgagggagacgcatcttgtaccatgcataaggtcattt |
203 |
Q |
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| T |
24422303 |
tacaaaataagtttatactattcaagatacggaggtaggccaagtctatggagtcgagggagacacatcttgcaccatacataaggtcattt |
24422394 |
T |
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