View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14423_low_9 (Length: 255)

Name: NF14423_low_9
Description: NF14423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14423_low_9
NF14423_low_9
[»] chr4 (11 HSPs)
chr4 (1-241)||(33506151-33506391)
chr4 (155-241)||(29348353-29348439)
chr4 (169-238)||(35833408-35833477)
chr4 (145-216)||(2116088-2116159)
chr4 (197-241)||(29348471-29348515)
chr4 (145-216)||(12682772-12682843)
chr4 (143-217)||(39406247-39406321)
chr4 (148-217)||(13171627-13171696)
chr4 (152-217)||(16895991-16896056)
chr4 (145-217)||(3757725-3757797)
chr4 (145-217)||(51347487-51347559)
[»] chr5 (7 HSPs)
chr5 (151-241)||(43352925-43353015)
chr5 (143-226)||(22693715-22693798)
chr5 (142-217)||(17643401-17643476)
chr5 (177-220)||(3214680-3214723)
chr5 (151-226)||(12422351-12422426)
chr5 (145-226)||(30140501-30140582)
chr5 (145-217)||(36886984-36887056)
[»] chr1 (9 HSPs)
chr1 (146-241)||(41918897-41918992)
chr1 (148-221)||(43116050-43116123)
chr1 (177-218)||(12712347-12712388)
chr1 (145-217)||(38894754-38894826)
chr1 (144-215)||(19322362-19322433)
chr1 (139-226)||(47134697-47134784)
chr1 (141-218)||(18107615-18107692)
chr1 (148-217)||(19400733-19400802)
chr1 (152-216)||(5426222-5426286)
[»] chr3 (12 HSPs)
chr3 (146-241)||(5237939-5238035)
chr3 (151-216)||(53800504-53800569)
chr3 (41-88)||(8574876-8574923)
chr3 (144-216)||(8393561-8393633)
chr3 (162-217)||(8016215-8016270)
chr3 (144-195)||(11602202-11602253)
chr3 (145-216)||(26777867-26777938)
chr3 (177-219)||(12177004-12177046)
chr3 (148-226)||(28981824-28981902)
chr3 (177-219)||(35433077-35433119)
chr3 (177-219)||(54797516-54797558)
chr3 (140-217)||(26102166-26102243)
[»] chr7 (8 HSPs)
chr7 (145-241)||(46197415-46197512)
chr7 (146-231)||(17814592-17814678)
chr7 (152-241)||(19052295-19052385)
chr7 (145-216)||(4848347-4848418)
chr7 (145-216)||(49146139-49146211)
chr7 (145-216)||(688062-688133)
chr7 (177-218)||(21893279-21893320)
chr7 (179-219)||(22992346-22992386)
[»] chr6 (10 HSPs)
chr6 (148-210)||(24939845-24939907)
chr6 (152-228)||(34316957-34317033)
chr6 (145-216)||(4107953-4108024)
chr6 (145-216)||(6969312-6969383)
chr6 (146-220)||(11267707-11267781)
chr6 (142-216)||(15045563-15045637)
chr6 (179-219)||(3092269-3092309)
chr6 (148-220)||(11519902-11519974)
chr6 (146-226)||(25529241-25529321)
chr6 (144-216)||(28573845-28573917)
[»] chr8 (9 HSPs)
chr8 (40-87)||(32781540-32781587)
chr8 (41-88)||(1142680-1142727)
chr8 (145-216)||(4466437-4466508)
chr8 (177-220)||(41901643-41901686)
chr8 (151-216)||(25616515-25616580)
chr8 (146-216)||(25620731-25620801)
chr8 (151-216)||(7389203-7389268)
chr8 (148-217)||(45434992-45435061)
chr8 (145-217)||(36776403-36776475)
[»] scaffold0051 (2 HSPs)
scaffold0051 (143-216)||(62059-62132)
scaffold0051 (177-219)||(53387-53429)
[»] scaffold0009 (1 HSPs)
scaffold0009 (144-226)||(225433-225515)
[»] chr2 (8 HSPs)
chr2 (177-219)||(14749131-14749173)
chr2 (142-216)||(28607217-28607291)
chr2 (145-217)||(32677199-32677271)
chr2 (138-220)||(7359011-7359093)
chr2 (140-217)||(17836961-17837038)
chr2 (179-219)||(10823761-10823801)
chr2 (152-220)||(19488454-19488522)
chr2 (142-194)||(24520862-24520914)
[»] scaffold0045 (1 HSPs)
scaffold0045 (148-205)||(18896-18953)
[»] scaffold0057 (1 HSPs)
scaffold0057 (143-216)||(20596-20669)
[»] scaffold0006 (1 HSPs)
scaffold0006 (177-218)||(157961-158002)
[»] scaffold0429 (1 HSPs)
scaffold0429 (144-228)||(12959-13042)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 33506391 - 33506151
Alignment:
Q  1 taaggtgatttataatttgggacggaataaatatactataatattattgaaagaatttatgaggaaggttgataaagtcaacataacaacttgtcctgtt 100  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| |||| ||| |||||||||| |||||| ||||||||||||||||||| ||||| |||    
T  33506391 taaggtgatttataatttgagacggaagaaatatactataataatattaaaaaaatttatgagaaaggttaataaagtcaacataacaacctgtccagtt 33506292  T
Q  101 ttcaaatcacaaagctaaatactaaacattcaaacatgttatatatctatatactaatataaaaatacatgtccattgaatttccaattttgcccttagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||    
T  33506291 ttcaaatcacaaagctaaatactaaacattcaaacatgttatatatctatacactaatataaaaatacatgtccattgaatttctaattttgtccttagg 33506192  T
Q  201 aggggtaatttggtaattcactaattcaccaatggcctatg 241  Q
    |||||||||||| |||||||||||||||| | |||||||||    
T  33506191 aggggtaatttgataattcactaattcactagtggcctatg 33506151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 29348439 - 29348353
Alignment:
Q  155 taatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaattcactaattcaccaatggcctatg 241  Q
    |||||||||||| ||||||||||||||||||||||||||  |||||||||| |||||| |||||||||||||||||| |||||||||    
T  29348439 taatataaaaatgcatgtccattgaatttccaattttgcatttaggaggggcaatttgataattcactaattcaccagtggcctatg 29348353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 35833477 - 35833408
Alignment:
Q  169 atgtccattgaatttccaattttgcccttaggaggggtaatttggtaattcactaattcaccaatggcct 238  Q
    ||||||||||| ||| | ||||||||| || |||||| ||||||||||||||||||||||||| ||||||    
T  35833477 atgtccattgattttaccattttgcccctatgaggggcaatttggtaattcactaattcaccagtggcct 35833408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 2116088 - 2116159
Alignment:
Q  145 atctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaa 216  Q
    |||||||||||||||||||| |  ||||||||||| ||| | |||||| |||||||||||| ||||||||||    
T  2116088 atctatatactaatataaaagttaatgtccattgattttaccattttgtccttaggaggggcaatttggtaa 2116159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 29348515 - 29348471
Alignment:
Q  197 taggaggggtaatttggtaattcactaattcaccaatggcctatg 241  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||    
T  29348515 taggaggggcaatttggtaattcactaattcaccagtggcctatg 29348471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 12682843 - 12682772
Alignment:
Q  145 atctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaa 216  Q
    |||||||||||||||||||| |  ||||||||||| ||| | ||||||||| || |||||| ||||||||||    
T  12682843 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctatgaggggcaatttggtaa 12682772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 39406321 - 39406247
Alignment:
Q  143 atatctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaat 217  Q
    ||||||||||||| ||||||||| | |||| | |||||||| | |||| |||| ||  |||||||||||||||||    
T  39406321 atatctatatacttatataaaaagaaatgttccttgaatttaccatttagcccctataaggggtaatttggtaat 39406247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 13171627 - 13171696
Alignment:
Q  148 tatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaat 217  Q
    ||||||||||||  |||||| |||||| |||||||| | ||||||||| ||  ||||| |||||||||||    
T  13171627 tatatactaataagaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaat 13171696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 16895991 - 16896056
Alignment:
Q  152 tactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaat 217  Q
    ||||||||  ||||| ||||||| |||||||| ||||||||||||||  |||||  ||||||||||    
T  16895991 tactaataagaaaatccatgtcccttgaatttacaattttgcccttataaggggctatttggtaat 16896056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 3757725 - 3757797
Alignment:
Q  145 atctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaat 217  Q
    |||||||||||||||  |||| | |||| |||||||||| | ||||||||| ||  ||||| |||||||||||    
T  3757725 atctatatactaataagaaaagaaatgttcattgaatttaccattttgcccctataaggggcaatttggtaat 3757797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 51347487 - 51347559
Alignment:
Q  145 atctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaat 217  Q
    |||||||||||||||  |||| | |||||| |||||||| | ||||||||| ||  ||||| |||||||||||    
T  51347487 atctatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaat 51347559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 151 - 241
Target Start/End: Original strand, 43352925 - 43353015
Alignment:
Q  151 atactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaattcactaattcaccaatggcctatg 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||| |||||||||||||| |||||||||    
T  43352925 atactaatataaaaatacatgtccattgaatttccaattttgcctataggaggggcaatttggtaaatcactaattcaccagtggcctatg 43353015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 22693715 - 22693798
Alignment:
Q  143 atatctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaattcactaatt 226  Q
    ||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||||| |||| ||||| |||||||    
T  22693715 atatctatatactaatataaaaatagatgtctattgattttccaattttgccctcaggaggggtattttgataatttactaatt 22693798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 17643476 - 17643401
Alignment:
Q  142 tatatctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaat 217  Q
    ||||||||||||||||||  |||||| |||||| ||||||||   ||||||||||||  ||||| |||||||||||    
T  17643476 tatatctatatactaataagaaaataaatgtcccttgaatttatcattttgcccttataaggggcaatttggtaat 17643401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 3214723 - 3214680
Alignment:
Q  177 tgaatttccaattttgcccttaggaggggtaatttggtaattca 220  Q
    ||||||||||||||||||||| | | ||||||||||||||||||    
T  3214723 tgaatttccaattttgccctttgaaagggtaatttggtaattca 3214680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 12422426 - 12422351
Alignment:
Q  151 atactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaattcactaatt 226  Q
    |||||||||||||||| ||||||| |||| ||| | ||||||||| ||  ||||| |||||||||||  |||||||    
T  12422426 atactaatataaaaattcatgtcctttgattttaccattttgcccctataaggggcaatttggtaatctactaatt 12422351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 30140501 - 30140582
Alignment:
Q  145 atctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaattcactaatt 226  Q
    ||||||||||| |||| |||| | |||||| |||||||| | ||||||||| ||  | |||||||||||||| | |||||||    
T  30140501 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggtaatttggtaaattactaatt 30140582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 36887056 - 36886984
Alignment:
Q  145 atctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaat 217  Q
    |||||||||||||||  |||| | |||||| |||||||| | ||||||||| ||  ||||| |||||||||||    
T  36887056 atctatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaat 36886984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 146 - 241
Target Start/End: Complemental strand, 41918992 - 41918897
Alignment:
Q  146 tctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaattcactaattcaccaatggcctatg 241  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| || |||||||| ||||| |||||||||| |||||||||    
T  41918992 tctatatactaatataaaaatatatgtccattgaatttccaattttgcccctaggagtggcaatttggtgattcattaattcaccagtggcctatg 41918897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 43116050 - 43116123
Alignment:
Q  148 tatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaattcac 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  43116050 tatatactaatataaaaatacatgtccattgaatttccaattttgcccctaggaggggcaatttggtaattcac 43116123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 12712347 - 12712388
Alignment:
Q  177 tgaatttccaattttgcccttaggaggggtaatttggtaatt 218  Q
    ||||||||||||||||||| ||||||||| ||||||||||||    
T  12712347 tgaatttccaattttgcccctaggaggggcaatttggtaatt 12712388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 38894754 - 38894826
Alignment:
Q  145 atctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaat 217  Q
    |||||||||||||||  ||| || ||||||||||||||| | ||||||||| ||  ||||| |||||||||||    
T  38894754 atctatatactaataagaaagtaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaat 38894826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 19322433 - 19322362
Alignment:
Q  144 tatctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggta 215  Q
    ||||||||||||||||  |||||| |||||| |||||||| | ||||||||| ||  ||||| |||||||||    
T  19322433 tatctatatactaataagaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggta 19322362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 226
Target Start/End: Original strand, 47134697 - 47134784
Alignment:
Q  139 ttatatatctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaattcactaatt 226  Q
    |||| |||||||||||| ||||||||    ||||||||||||||| | ||||||||| ||  ||||| |||||||||| | |||||||    
T  47134697 ttatctatctatatacttatataaaaggtaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaatt 47134784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 18107615 - 18107692
Alignment:
Q  141 atatatctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaatt 218  Q
    |||||||||||||||| ||| ||| |  ||| ||  | ||||||| ||||||||||||||||||||| ||| ||||||    
T  18107615 atatatctatatactactattaaagttgatgccctataaatttcccattttgcccttaggaggggtatttttgtaatt 18107692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 19400733 - 19400802
Alignment:
Q  148 tatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaat 217  Q
    ||||||||||||  ||||| ||||||| |||||||| | ||||||||| ||  |||||||||| ||||||    
T  19400733 tatatactaataagaaaatccatgtcccttgaatttaccattttgcccatataaggggtaattcggtaat 19400802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 5426222 - 5426286
Alignment:
Q  152 tactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaa 216  Q
    ||||||||||| | |  ||||||||||| ||| | ||||||||||||| ||||| ||||||||||    
T  5426222 tactaatataacagttaatgtccattgattttaccattttgcccttagaaggggcaatttggtaa 5426286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 241
Target Start/End: Original strand, 5237939 - 5238035
Alignment:
Q  146 tctatatactaatataaaaatacatgtccattgaatttccaattttg-cccttaggaggggtaatttggtaattcactaattcaccaatggcctatg 241  Q
    ||||||||||| |||||||| | |||||||||||||||||||||||| ||| || |||||||||||||||||||||| ||||||||||| |||||||    
T  5237939 tctatatactactataaaaagagatgtccattgaatttccaattttgccccatatgaggggtaatttggtaattcacaaattcaccaatagcctatg 5238035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 53800504 - 53800569
Alignment:
Q  151 atactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaa 216  Q
    |||||||||||||| |  ||||||||||| ||| | ||||||||||||||||||| ||||||||||    
T  53800504 atactaatataaaagttaatgtccattgattttaccattttgcccttaggaggggcaatttggtaa 53800569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 8574923 - 8574876
Alignment:
Q  41 atattattgaaagaatttatgaggaaggttgataaagtcaacataaca 88  Q
    |||||||||||||||||| ||||||||||||||||||  |||||||||    
T  8574923 atattattgaaagaatttgtgaggaaggttgataaaggtaacataaca 8574876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 8393561 - 8393633
Alignment:
Q  144 tatctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaa 216  Q
    ||||||||||||||||||||| |  |||||| |||||||| | ||||||||| ||  ||||| ||||||||||    
T  8393561 tatctatatactaatataaaagttaatgtcctttgaatttaccattttgcccctataaggggcaatttggtaa 8393633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 8016215 - 8016270
Alignment:
Q  162 aaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaat 217  Q
    ||||||||||||   ||||| ||||||| ||||||||||||||| |||||||||||    
T  8016215 aaaatacatgtcatatgaatctccaattatgcccttaggaggggcaatttggtaat 8016270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 11602253 - 11602202
Alignment:
Q  144 tatctatatactaatataaaaatacatgtccattgaatttccaattttgccc 195  Q
    ||||||||||||||||||||||| ||||||| |||| ||| | |||||||||    
T  11602253 tatctatatactaatataaaaatccatgtccgttgattttaccattttgccc 11602202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 26777938 - 26777867
Alignment:
Q  145 atctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaa 216  Q
    |||||||||||||||||||| |  | ||||||||| ||| | ||||||||| || |||||| ||||||||||    
T  26777938 atctatatactaatataaaagttaacgtccattgattttaccattttgcccctatgaggggcaatttggtaa 26777867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 12177046 - 12177004
Alignment:
Q  177 tgaatttccaattttgcccttaggaggggtaatttggtaattc 219  Q
    ||||||||||||||||| | ||||||||| |||||||||||||    
T  12177046 tgaatttccaattttgctcctaggaggggcaatttggtaattc 12177004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 28981902 - 28981824
Alignment:
Q  148 tatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaattcactaatt 226  Q
    ||||||||||||  ||||| ||||||| |||||||| | ||||||||| ||  ||||| |||||||||||  |||||||    
T  28981902 tatatactaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaatt 28981824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 35433077 - 35433119
Alignment:
Q  177 tgaatttccaattttgcccttaggaggggtaatttggtaattc 219  Q
    ||||||||||||||| |||||||| |||| |||||||||||||    
T  35433077 tgaatttccaattttacccttaggtggggcaatttggtaattc 35433119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 54797558 - 54797516
Alignment:
Q  177 tgaatttccaattttgcccttaggaggggtaatttggtaattc 219  Q
    |||||||||||||||||| ||||||| || |||||||||||||    
T  54797558 tgaatttccaattttgcctttaggagaggcaatttggtaattc 54797516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 26102243 - 26102166
Alignment:
Q  140 tatatatctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaat 217  Q
    ||||||| ||||||||||||  |||| | |||||| |||||||| | ||||||||| ||  || ||||||||||||||    
T  26102243 tatatatatatatactaataagaaaagaaatgtcctttgaatttaccattttgcccctataagaggtaatttggtaat 26102166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 241
Target Start/End: Original strand, 46197415 - 46197512
Alignment:
Q  145 atctatatactaa-tataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaattcactaattcaccaatggcctatg 241  Q
    ||||||||||||| ||||||| |  ||||||||||| ||| | |||||||||||||||| || ||||||||||||||||||||||||| |||||||||    
T  46197415 atctatatactaaatataaaagttaatgtccattgattttaccattttgcccttaggagaggcaatttggtaattcactaattcaccattggcctatg 46197512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 146 - 231
Target Start/End: Original strand, 17814592 - 17814678
Alignment:
Q  146 tctatatactaatataaaaatacatgtccattgaatttccaattttg-cccttaggaggggtaatttggtaattcactaattcacca 231  Q
    ||||||||||| |||||||| | |||||||||||||||||||||||| ||| ||||| ||| ||||||||||||||| |||||||||    
T  17814592 tctatatactactataaaaagagatgtccattgaatttccaattttgccccataggaagggcaatttggtaattcacaaattcacca 17814678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 19052385 - 19052295
Alignment:
Q  152 tactaatataaaaatacatgtccattgaatttccaattttg-cccttaggaggggtaatttggtaattcactaattcaccaatggcctatg 241  Q
    ||||| |||||||| | |||||||||||||||||||||||| ||| || |||||| ||||||||||||||  ||||||||| | |||||||    
T  19052385 tactactataaaaagagatgtccattgaatttccaattttgccccatatgaggggcaatttggtaattcataaattcaccagtagcctatg 19052295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 4848347 - 4848418
Alignment:
Q  145 atctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaa 216  Q
    |||||||||||||||||||| |  ||||||||||| ||| | ||||||||| || |||||||||||||||||    
T  4848347 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctatgaggggtaatttggtaa 4848418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 49146211 - 49146139
Alignment:
Q  145 atctatatactaatataaaaa-tacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaa 216  Q
    ||||||||||||||||||||| |  ||||||||||| ||| | ||||||||| || |||||| ||||||||||    
T  49146211 atctatatactaatataaaaagttaatgtccattgattttaccattttgcccctatgaggggcaatttggtaa 49146139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 688062 - 688133
Alignment:
Q  145 atctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaa 216  Q
    |||||||||||||||||||| |  |||||| |||||||| | ||||||||| ||  ||||| ||||||||||    
T  688062 atctatatactaatataaaagttaatgtcctttgaatttaccattttgcccctataaggggcaatttggtaa 688133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 21893279 - 21893320
Alignment:
Q  177 tgaatttccaattttgcccttaggaggggtaatttggtaatt 218  Q
    |||||||||| |||||||| ||||||||| ||||||||||||    
T  21893279 tgaatttccatttttgcccctaggaggggcaatttggtaatt 21893320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 22992346 - 22992386
Alignment:
Q  179 aatttccaattttgcccttaggaggggtaatttggtaattc 219  Q
    ||||| ||||||||||||||| ||||||||||| |||||||    
T  22992346 aatttacaattttgcccttagaaggggtaatttagtaattc 22992386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 24939907 - 24939845
Alignment:
Q  148 tatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatt 210  Q
    |||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| ||||    
T  24939907 tatatactaatataaaaatacatgtccattgaattttcaattttggccctaggaggggcaatt 24939845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 34316957 - 34317033
Alignment:
Q  152 tactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaattcactaattca 228  Q
    ||||||||||||||   ||||||||||| ||| |  |||||||| || |||||| |||||||||||| |||||||||    
T  34316957 tactaatataaaaagtgatgtccattgattttacctttttgcccctaagaggggcaatttggtaatttactaattca 34317033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 4107953 - 4108024
Alignment:
Q  145 atctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaa 216  Q
    |||||||||||||||||||| |  ||||||||||| ||| | ||||| ||| || |||||| ||||||||||    
T  4107953 atctatatactaatataaaagttaatgtccattgattttaccatttttcccctatgaggggcaatttggtaa 4108024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 6969383 - 6969312
Alignment:
Q  145 atctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaa 216  Q
    |||||||||||||||||||| |  |||||| |||||||| | ||||||||| ||  ||||| ||||||||||    
T  6969383 atctatatactaatataaaagttaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 6969312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 11267707 - 11267781
Alignment:
Q  146 tctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaattca 220  Q
    ||||||||||||||  |||||  ||||||  |||||| ||| ||||||||| | |||||| ||||||||||||||    
T  11267707 tctatatactaataagaaaattaatgtcctatgaattaccatttttgccctcaagaggggcaatttggtaattca 11267781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 15045637 - 15045563
Alignment:
Q  142 tatatctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaa 216  Q
    |||||||||||||| |||| |||| | |||||| |||||||| | ||||||||| ||  | ||||||||||||||    
T  15045637 tatatctatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaagggtaatttggtaa 15045563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 3092309 - 3092269
Alignment:
Q  179 aatttccaattttgcccttaggaggggtaatttggtaattc 219  Q
    ||||| ||||||||||| ||||||||| |||||||||||||    
T  3092309 aattttcaattttgcccataggaggggcaatttggtaattc 3092269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 11519974 - 11519902
Alignment:
Q  148 tatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaattca 220  Q
    ||||||||||||  |||||  ||||||  |||||| ||| ||||||||| | |||||| ||||||||||||||    
T  11519974 tatatactaataagaaaattaatgtcctatgaattaccatttttgccctcaagaggggcaatttggtaattca 11519902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 25529241 - 25529321
Alignment:
Q  146 tctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaattcactaatt 226  Q
    ||||||||||||||||||||| ||||||| |||  ||| | ||||||| | ||  ||||| |||||||||||  |||||||    
T  25529241 tctatatactaatataaaaatccatgtccgttgcttttacgattttgctcctataaggggcaatttggtaatctactaatt 25529321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 28573917 - 28573845
Alignment:
Q  144 tatctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaa 216  Q
    |||||||||||| |||||||| |  || ||| |||| ||| | ||||||||| ||||||||| ||||||||||    
T  28573917 tatctatatactgatataaaagttaatatcctttgattttaccattttgcccctaggaggggcaatttggtaa 28573845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 32781587 - 32781540
Alignment:
Q  40 aatattattgaaagaatttatgaggaaggttgataaagtcaacataac 87  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32781587 aatattattgaaagaatttgtgaggaaggttgataaagtcaacataac 32781540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 1142727 - 1142680
Alignment:
Q  41 atattattgaaagaatttatgaggaaggttgataaagtcaacataaca 88  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  1142727 atattattgaaagaatttgtgaggaaggttggtaaagtcaacataaca 1142680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 4466508 - 4466437
Alignment:
Q  145 atctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaa 216  Q
    |||||||||||||||||||| |  ||||||||||| ||| | ||||| ||||||||||||| ||||||||||    
T  4466508 atctatatactaatataaaagttaatgtccattgattttaccattttacccttaggaggggcaatttggtaa 4466437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 41901643 - 41901686
Alignment:
Q  177 tgaatttccaattttgcccttaggaggggtaatttggtaattca 220  Q
    |||||||| ||||||||||||||||||| |||||||||||||||    
T  41901643 tgaatttctaattttgcccttaggagggataatttggtaattca 41901686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 25616580 - 25616515
Alignment:
Q  151 atactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaa 216  Q
    |||||||||||||| |  ||||||||||| ||| | |||||||||||| |||||| ||||||||||    
T  25616580 atactaatataaaagttaatgtccattgattttaccattttgcccttaagaggggcaatttggtaa 25616515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 25620801 - 25620731
Alignment:
Q  146 tctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaa 216  Q
    |||||| ||| |||||||| | |||||||||||| ||| | ||||||||| || |||||| ||||||||||    
T  25620801 tctatacactgatataaaagttcatgtccattgattttactattttgcccctatgaggggcaatttggtaa 25620731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 7389203 - 7389268
Alignment:
Q  151 atactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaa 216  Q
    |||||||||||||| |  ||||||||||| ||| | |||||||||  |||||||| ||||||||||    
T  7389203 atactaatataaaagttaatgtccattgattttaccattttgccccaaggaggggcaatttggtaa 7389268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 45434992 - 45435061
Alignment:
Q  148 tatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaat 217  Q
    ||||||||||||  ||||| ||||||  |||||||| | ||||||||||||  ||||| |||||||||||    
T  45434992 tatatactaataagaaaatccatgtcacttgaatttaccattttgcccttataaggggcaatttggtaat 45435061  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 36776403 - 36776475
Alignment:
Q  145 atctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaat 217  Q
    |||||||||||||||  |||| | |||||| |||||||| | ||||||||| ||  ||||| |||||||||||    
T  36776403 atctatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaat 36776475  T

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Target: scaffold0051 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 62059 - 62132
Alignment:
Q  143 atatctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaa 216  Q
    |||||||||||||||||||||| |  ||||||||||| ||| | ||||||||| || |||||| ||||||||||    
T  62059 atatctatatactaatataaaagttaatgtccattgattttaccattttgcccctatgaggggcaatttggtaa 62132  T

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Target: scaffold0051; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 53387 - 53429
Alignment:
Q  177 tgaatttccaattttgcccttaggaggggtaatttggtaattc 219  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||    
T  53387 tgaatttccaattttgcccctagaaggggcaatttggtaattc 53429  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 226
Target Start/End: Original strand, 225433 - 225515
Alignment:
Q  144 tatctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaattcactaatt 226  Q
    |||||||||||| |||| |||| | ||||||||||||||| | ||||||||| ||  ||||| |||||||||| | |||||||    
T  225433 tatctatatacttatattaaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaatt 225515  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 14749131 - 14749173
Alignment:
Q  177 tgaatttccaattttgcccttaggaggggtaatttggtaattc 219  Q
    ||||||||||||||||||||||||||| | |||||||||||||    
T  14749131 tgaatttccaattttgcccttaggaggagcaatttggtaattc 14749173  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 28607217 - 28607291
Alignment:
Q  142 tatatctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaa 216  Q
    |||||||||||||| |||| |||||| ||||||||||||||| | |||||| || ||  ||||| ||||||||||    
T  28607217 tatatctatatacttatattaaaataaatgtccattgaatttaccattttgtccctataaggggcaatttggtaa 28607291  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 32677271 - 32677199
Alignment:
Q  145 atctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaat 217  Q
    ||||||||||| |||| |||||| |||||| |||||||| | ||||||||| ||  ||||| |||||||||||    
T  32677271 atctatatacttatattaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaat 32677199  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 7359011 - 7359093
Alignment:
Q  138 gttatatatctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaattca 220  Q
    ||||| ||| ||||||||||||  |||||  ||||||  |||||| ||| ||||||||| | |||||| ||||||||||||||    
T  7359011 gttatctatatatatactaataagaaaattaatgtcctatgaattaccatttttgccctcaagaggggcaatttggtaattca 7359093  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 17836961 - 17837038
Alignment:
Q  140 tatatatctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaat 217  Q
    ||||||| |||||||| |||| |||| | |||||| |||||||| | ||||||||| ||  ||||| |||||||||||    
T  17836961 tatatatatatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaat 17837038  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 10823801 - 10823761
Alignment:
Q  179 aatttccaattttgcccttaggaggggtaatttggtaattc 219  Q
    ||||| ||||||||||||||| ||||| |||||||||||||    
T  10823801 aatttacaattttgcccttagaaggggcaatttggtaattc 10823761  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 19488454 - 19488522
Alignment:
Q  152 tactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaattca 220  Q
    |||||||||||||||  ||||||  |||||| ||| ||||||| | | ||||||||||||||| |||||    
T  19488454 tactaatataaaaattaatgtcctatgaattaccatttttgccttcaagaggggtaatttggtgattca 19488522  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 24520862 - 24520914
Alignment:
Q  142 tatatctatatactaatataaaaatacatgtccattgaatttccaattttgcc 194  Q
    |||||||||||||| ||||||||| | |||||| ||||||||  |||||||||    
T  24520862 tatatctatatacttatataaaaagaaatgtcccttgaatttataattttgcc 24520914  T

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Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 18953 - 18896
Alignment:
Q  148 tatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggagggg 205  Q
    ||||||||| |||||||||||||||||||||| |||   ||||||||| |||||||||    
T  18953 tatatactattataaaaatacatgtccattgattttatcattttgcccctaggagggg 18896  T

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Target: scaffold0057 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 20669 - 20596
Alignment:
Q  143 atatctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaa 216  Q
    ||||||||||||| |||| |||| | |||||| |||||||| | ||||||||| ||  ||||| ||||||||||    
T  20669 atatctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 20596  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 158002 - 157961
Alignment:
Q  177 tgaatttccaattttgcccttaggaggggtaatttggtaatt 218  Q
    ||||||||||||||||| ||||||||||| |||||| |||||    
T  158002 tgaatttccaattttgctcttaggaggggcaatttgataatt 157961  T

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Target: scaffold0429 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 12959 - 13042
Alignment:
Q  144 tatctatatactaatataaaaatacatgtccattgaatttccaattttgcccttaggaggggtaatttggtaattcactaattca 228  Q
    |||||||||||||||||| |||   ||||| ||||| ||| |  |||||||| || |||||| |||||||||||| |||||||||    
T  12959 tatctatatactaatatagaaagtgatgtcaattgattttacc-ttttgcccctaagaggggcaatttggtaatttactaattca 13042  T

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