View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14424_high_11 (Length: 457)
Name: NF14424_high_11
Description: NF14424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14424_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 12874374 - 12874006
Alignment:
| Q |
1 |
atacaaagttttcacactacatgttcttttcttcaaattgatttaagtgtctaacgttcattcccttaacttagctagggttaactaaggtctctcaaaa |
100 |
Q |
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| T |
12874374 |
atacaaagttttcacactacatgttcttttcttcaaattgatttaagtgtctaatgttcattcccttaactcagctatggttaactcaggtctctcaaaa |
12874275 |
T |
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| Q |
101 |
tcacctatatttatggaaaagaaaagaaagtcgatcgaaaattgcttacaacctgacggttgaacaatctgaaggatatattgaacaaccgtttaatgca |
200 |
Q |
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| T |
12874274 |
tcgcctatatttatggaaaagaaaagaaagtcgatcgggaattgcttacaacctgacggttgaacaatctgaaggacatattgaacaaccgtttaatgcc |
12874175 |
T |
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| Q |
201 |
tttgccttgcataggttgtgtccgtgtaaacacacgttatggattcgattgttggttatagtgaaacttatgcatcttaaaacattataaacgatatggt |
300 |
Q |
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| T |
12874174 |
tttgccttgcataggttgtgtccgtgtaaacacacgttatggattcgattgttggttgtagtgaaacttatgcgtcttaaaacgttataaacgatatggt |
12874075 |
T |
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| Q |
301 |
gcctaacttattgttatcttgttgctatacgacaagagtgtgaagctcgttatttgtcttatatttaca |
369 |
Q |
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| T |
12874074 |
gcctaacttattgttatcttgttgctatacgacaagagtgtgaagctcgttatttgccttatatttaca |
12874006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 368 - 441
Target Start/End: Complemental strand, 12873973 - 12873900
Alignment:
| Q |
368 |
caactcaagaaaactgttctcatatactattattcttgaaaaagtattcaagaaccatgttcggttgtatttag |
441 |
Q |
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| T |
12873973 |
caactcaagaaaactgttctcatatactattattcttgaaaaagtattcaagaaccatgttcggttgtatttag |
12873900 |
T |
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