View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14424_high_20 (Length: 306)
Name: NF14424_high_20
Description: NF14424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14424_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 10 - 288
Target Start/End: Complemental strand, 11436856 - 11436585
Alignment:
| Q |
10 |
agaagcaaaggcaaatcactaagaccaaatgcccccactatgtttacaagtttagtataacagatatgagtactttttgtttcccaactatgaattttga |
109 |
Q |
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| T |
11436856 |
agaagcaaaggcaaatcactaagaccaaatgcccccactatgtttacaagtttagtataacagatatgagtactttttgtttcccaactatgaattttga |
11436757 |
T |
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| Q |
110 |
attttgaattttcttgcacaactattccgaattgtctatagtgtattctaaatagtttccactaacatttattagtcagaaaattgaatggatagaagtt |
209 |
Q |
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| T |
11436756 |
atttt-------cttgcacaactattccgaattgtctatagtgtattctaaatagtttccactaacatttattagtcagaaaattgaatggatagaagtt |
11436664 |
T |
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| Q |
210 |
agaaattcactcatggacttccttcgtatgctaactaattataaataaagtaaatcaactcaatttttcttaggaaaat |
288 |
Q |
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| T |
11436663 |
agaaattcactcatggacttccttcgtatgctaactaattataaataaagtaaatcaactcaatttttcttaggaaaat |
11436585 |
T |
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