View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14424_high_21 (Length: 305)

Name: NF14424_high_21
Description: NF14424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14424_high_21
NF14424_high_21
[»] chr6 (2 HSPs)
chr6 (213-301)||(27707869-27707957)
chr6 (213-286)||(27727710-27727783)
[»] chr2 (1 HSPs)
chr2 (129-178)||(40274765-40274814)
[»] scaffold0349 (1 HSPs)
scaffold0349 (213-286)||(6289-6362)
[»] chr4 (1 HSPs)
chr4 (129-183)||(1558766-1558820)
[»] chr1 (1 HSPs)
chr1 (130-183)||(48769520-48769573)
[»] chr8 (1 HSPs)
chr8 (129-183)||(26154906-26154960)
[»] chr5 (1 HSPs)
chr5 (129-183)||(18979488-18979542)


Alignment Details
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 213 - 301
Target Start/End: Complemental strand, 27707957 - 27707869
Alignment:
Q  213 aaatgatttgtaacatatcaggcacagtgaatttctttttagttgtatactctttgcagctgtagggttattattcttctttgggtgaa 301  Q
    |||||||| || || |||||||| |||||||||||||||| ||||||| |||||||||| |||||| ||||||||||| ||||||||||    
T  27707957 aaatgattggtgacgtatcaggctcagtgaatttcttttttgttgtatgctctttgcagttgtaggattattattcttttttgggtgaa 27707869  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 27727783 - 27727710
Alignment:
Q  213 aaatgatttgtaacatatcaggcacagtgaatttctttttagttgtatactctttgcagctgtagggttattat 286  Q
    |||||||| || || |||||||| |||||||||||||||| ||||||| |||||||||| |||||| |||||||    
T  27727783 aaatgattggtgacgtatcaggctcagtgaatttcttttttgttgtatgctctttgcagttgtaggattattat 27727710  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 40274765 - 40274814
Alignment:
Q  129 tggggatccaattctaagcaagcaagctgcctcatttaaaatagctactt 178  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40274765 tggggatccaattctaagcaagcaagctgcctcatctaaaatagctactt 40274814  T

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Target: scaffold0349 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 6362 - 6289
Alignment:
Q  213 aaatgatttgtaacatatcaggcacagtgaatttctttttagttgtatactctttgcagctgtagggttattat 286  Q
    |||||||| || || |||||||| |||||||||||||||| ||||||| |||||||||| |||||| |||||||    
T  6362 aaatgattggtgacgtatcaggctcagtgaatttcttttttgttgtatgctctttgcagttgtaggattattat 6289  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 1558820 - 1558766
Alignment:
Q  129 tggggatccaattctaagcaagcaagctgcctcatttaaaatagctacttctgat 183  Q
    |||||||||||  |||||||||||||||||||||| |||||||||||||| ||||    
T  1558820 tggggatccaaacctaagcaagcaagctgcctcatctaaaatagctacttatgat 1558766  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 48769520 - 48769573
Alignment:
Q  130 ggggatccaattctaagcaagcaagctgcctcatttaaaatagctacttctgat 183  Q
    ||||||||||  |||||||||||||||||||||| |||||||||||||| ||||    
T  48769520 ggggatccaaacctaagcaagcaagctgcctcatctaaaatagctacttatgat 48769573  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 26154906 - 26154960
Alignment:
Q  129 tggggatccaattctaagcaagcaagctgcctcatttaaaatagctacttctgat 183  Q
    ||||||||||| |||||||||||||||| |||||| |||||| ||||||| ||||    
T  26154906 tggggatccaaatctaagcaagcaagctacctcatctaaaatcgctacttatgat 26154960  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 18979488 - 18979542
Alignment:
Q  129 tggggatccaattctaagcaagcaagctgcctcatttaaaatagctacttctgat 183  Q
    |||||||| ||  |||||||||||||||||||||| |||||||| ||||| ||||    
T  18979488 tggggatctaaacctaagcaagcaagctgcctcatctaaaatagatacttatgat 18979542  T

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