View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14424_high_22 (Length: 284)
Name: NF14424_high_22
Description: NF14424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14424_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 46080660 - 46080909
Alignment:
| Q |
19 |
attcttgtgctgattataatttataattacatcatgcggcttttgctaattaagtgaacgattttcttgttaatatgacgagttacatttgtggtttgat |
118 |
Q |
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| T |
46080660 |
attcttgtggtggttataatttataattacatcacgcggcttttgctaattaagtgaacgattttcttgttaacatgacgagttacatttgtggtttcat |
46080759 |
T |
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| Q |
119 |
ggttttcttcttcttcttctaagttacccgtcaatgaataggggtgatttatctatctctttcnnnnnnnnntctcattttcttgatttttattcttaca |
218 |
Q |
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| T |
46080760 |
ggttttttttttcttcttctaagttacccgttaatgaatagggatgatttatctatctctttcaaagaaaaatctcattttcttcatttttattctcaga |
46080859 |
T |
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| Q |
219 |
atcgattaccctttttatcttaaaaacatcaaattcttcatctctttcat |
268 |
Q |
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| T |
46080860 |
atcgattaccatttttatcttaagaacatcaaattcttcatctctttcat |
46080909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 35956981 - 35957026
Alignment:
| Q |
206 |
ttttattcttacaatcgattaccctttttatcttaaaaacatcaaa |
251 |
Q |
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| T |
35956981 |
ttttattcttacaattaattaccatttttatctcaaaaacatcaaa |
35957026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 43208734 - 43208792
Alignment:
| Q |
196 |
ttttcttgatttttattcttacaatcgattaccctttttatcttaaaaacatcaaattc |
254 |
Q |
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| T |
43208734 |
ttttcttcatctttattcttacaatcaattaccatttttattttaagaatatcaaattc |
43208792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 17736970 - 17736929
Alignment:
| Q |
212 |
tcttacaatcgattaccctttttatcttaaaaacatcaaatt |
253 |
Q |
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| T |
17736970 |
tcttacaatcgattaccatttttatcttaagaatatcaaatt |
17736929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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