View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14424_high_23 (Length: 283)
Name: NF14424_high_23
Description: NF14424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14424_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 5939464 - 5939218
Alignment:
| Q |
17 |
tatatgcaatccactttcaggggaggtgccaatggaatgtttatcagcaaaaactcttagtggaagatcattcagaaactcaacaaacagaatcacaatg |
116 |
Q |
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| T |
5939464 |
tatatgcaatccactttcaggggaggtgccaatggaatgtttatcagcaaaaactcttagtggaagatcattcagaaactcaacaaacagaatcacaatg |
5939365 |
T |
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| Q |
117 |
tctgctcctcttgtttattctgcaagacatattcaaatgaagccatcaatttacacacatgaagatgtttctcttaaatttccaattccaggttcatatg |
216 |
Q |
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| T |
5939364 |
tctgctcctcttgtttattctgcaagacatattcaaatgaagccatcaatttacacacatgaagatgtttctcttaaatttccaattccaggttcatatg |
5939265 |
T |
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| Q |
217 |
cttttgattcccaattctacttcggccggccatgttcggattgacttattt |
267 |
Q |
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| T |
5939264 |
cttttgattcccaattcgactt----cggccatgttcggattgacttattt |
5939218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 6894410 - 6894495
Alignment:
| Q |
17 |
tatatgcaatccactttcaggggaggtgccaatggaatgtttatcagcaaaaactcttagtggaagatcattcagaaactcaacaa |
102 |
Q |
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|||||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |
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| T |
6894410 |
tatatgcaatcctctttcaggggaagtaccaatggaatgtttatctgcaaaaactcttagtggaagattatttcaaaactcaacaa |
6894495 |
T |
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