View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14424_high_25 (Length: 249)

Name: NF14424_high_25
Description: NF14424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14424_high_25
NF14424_high_25
[»] chr1 (6 HSPs)
chr1 (1-88)||(2094232-2094321)
chr1 (185-248)||(42883751-42883814)
chr1 (192-249)||(2094366-2094423)
chr1 (188-249)||(11821177-11821238)
chr1 (186-229)||(37260911-37260954)
chr1 (192-248)||(35391493-35391549)
[»] chr5 (6 HSPs)
chr5 (96-236)||(17644507-17644648)
chr5 (89-170)||(7164274-7164355)
chr5 (89-198)||(1145776-1145886)
chr5 (187-236)||(11135771-11135820)
chr5 (187-236)||(3759583-3759632)
chr5 (121-170)||(40266539-40266588)
[»] chr3 (2 HSPs)
chr3 (1-69)||(53782281-53782349)
chr3 (89-225)||(54528855-54528993)
[»] chr7 (5 HSPs)
chr7 (121-170)||(149051-149100)
chr7 (188-229)||(26011953-26011994)
chr7 (192-236)||(26009399-26009443)
chr7 (188-236)||(30359733-30359781)
chr7 (193-233)||(38790918-38790958)
[»] chr6 (4 HSPs)
chr6 (109-170)||(807122-807183)
chr6 (193-236)||(35060900-35060943)
chr6 (68-119)||(806687-806739)
chr6 (193-249)||(14153371-14153427)
[»] chr4 (4 HSPs)
chr4 (187-249)||(27992303-27992365)
chr4 (188-239)||(38677662-38677713)
chr4 (188-249)||(36217887-36217948)
chr4 (188-249)||(38676956-38677017)
[»] chr2 (1 HSPs)
chr2 (188-249)||(37893008-37893069)
[»] chr8 (2 HSPs)
chr8 (194-228)||(35841435-35841469)
chr8 (207-249)||(37687331-37687373)


Alignment Details
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 2094232 - 2094321
Alignment:
Q  1 cttgtgtagtaatgtatattt--gaccacaccccacttggattggaccaggctgctggcctttaagagaaacaaaaccagcgtaagttaa 88  Q
    ||||| |||||||||||||||  || ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||    
T  2094232 cttgtatagtaatgtatatttttgatcacaccccacttggattggaccaggctgctggcttttatgagaaacaaaaccagcgtgagttaa 2094321  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 42883751 - 42883814
Alignment:
Q  185 ttgcgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccattt 248  Q
    |||||| ||||||||||  ||||||||||||||||||||| ||| ||||||| || ||||||||    
T  42883751 ttgcgtgagttaacatgtgtagggatattttggacatttattttagaaatgagcaaaaccattt 42883814  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 2094366 - 2094423
Alignment:
Q  192 agttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttg 249  Q
    |||||| |||| |||||||||||| |||||||||||||||||||| || ||| |||||    
T  2094366 agttaatatgcgtagggatattttagacatttactttggaaatgagcagaacaatttg 2094423  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 11821238 - 11821177
Alignment:
Q  188 cgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttg 249  Q
    ||||||||||||||||||||   ||||||||| |||||||||| |||||||  |||||||||    
T  11821238 cgtaagttaacatgcataggagcattttggacttttactttgggaatgaacgaaaccatttg 11821177  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 37260911 - 37260954
Alignment:
Q  186 tgcgtaagttaacatgcatagggatattttggacatttactttg 229  Q
    ||||| |||||||||||||||||  |||||||||||||||||||    
T  37260911 tgcgtgagttaacatgcataggggcattttggacatttactttg 37260954  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 35391549 - 35391493
Alignment:
Q  192 agttaacatgcatagggatattttggacatttactttggaaatgaacataaccattt 248  Q
    ||||||||||| || |  ||||||||||||||||||||| |||||||  ||||||||    
T  35391549 agttaacatgcgtatgagtattttggacatttactttgggaatgaacgaaaccattt 35391493  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 236
Target Start/End: Original strand, 17644507 - 17644648
Alignment:
Q  96 gggttttagtgtgtttttcttttgtgtgacttaagtcatgcagcgtgaattaactcacgaaaatttaacactagcatgacat-acttatgttgcgtaagt 194  Q
    ||||||||||||||  || || || |||| |||||||| ||||||||| |||||||| | ||||||||||||||| |||  | |||| | |||||| | |    
T  17644507 gggttttagtgtgtgatttttctgcgtgatttaagtcacgcagcgtgagttaactcatgtaaatttaacactagcgtgagttaacttttattgcgtgaat 17644606  T
Q  195 taacatgcatagggatattttggacatttactttggaaatga 236  Q
    |||||||| ||||| ||||||||||||||||||||| |||||    
T  17644607 taacatgcgtaggggtattttggacatttactttgggaatga 17644648  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 7164355 - 7164274
Alignment:
Q  89 tcacgctgggttttagtgtgtttttcttttgtgtgacttaagtcatgcagcgtgaattaactcacgaaaatttaacactagc 170  Q
    ||||| ||||||||||||||| ||| || || ||||||||||||| || ||||||||||||||| | |||||||||| ||||    
T  7164355 tcacgttgggttttagtgtgtgttttttctgcgtgacttaagtcacgcggcgtgaattaactcatgcaaatttaacattagc 7164274  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 1145776 - 1145886
Alignment:
Q  89 tcacgctgggttttagtgtgtttttcttttgtgtgacttaagtcatgcagcgtgaattaactcacgaaaatttaacactagcatgacat-acttatgttg 187  Q
    |||||||||||||| |||||| ||| || || |||||||||| || ||||||||| |||||||| | |||||| ||| |||| |||  | ||| |||| |    
T  1145776 tcacgctgggttttggtgtgtattttttctgcgtgacttaagacacgcagcgtgagttaactcatgcaaattttacattagcgtgagttaactaatgtag 1145875  T
Q  188 cgtaagttaac 198  Q
    |||||||||||    
T  1145876 cgtaagttaac 1145886  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 11135820 - 11135771
Alignment:
Q  187 gcgtaagttaacatgcatagggatattttggacatttactttggaaatga 236  Q
    |||||||||||||||| ||||| |||||||| |||||| |||||||||||    
T  11135820 gcgtaagttaacatgcgtaggggtattttggtcatttattttggaaatga 11135771  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 3759583 - 3759632
Alignment:
Q  187 gcgtaagttaacatgcatagggatattttggacatttactttggaaatga 236  Q
    |||| |||||||||| |||||| |||||||| |||||| |||||||||||    
T  3759583 gcgtgagttaacatgaatagggttattttggtcatttattttggaaatga 3759632  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 40266539 - 40266588
Alignment:
Q  121 gtgacttaagtcatgcagcgtgaattaactcacgaaaatttaacactagc 170  Q
    ||||||||||||| | ||||||| |||||||||| |||||||||| ||||    
T  40266539 gtgacttaagtcacgtagcgtgagttaactcacgcaaatttaacattagc 40266588  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 53782281 - 53782349
Alignment:
Q  1 cttgtgtagtaatgtatatttgaccacaccccacttggattggaccaggctgctggcctttaagagaaa 69  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  53782281 cttgtatagtaatgtatctttgaccacaccccacttggattggaccaggctgctgccttttaagagaaa 53782349  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 54528855 - 54528993
Alignment:
Q  89 tcacgctgggttttagtgtgtttttctttt-gtgtgacttaagtcatgcagcgtgaattaactcacgaaaatttaacactagcatgacat-acttatgtt 186  Q
    ||||||||||||||||| ||||||| |||| ||| ||||||||||||| | ||||| ||||||| |  |||||||||| |||  |||  | ||| | |||    
T  54528855 tcacgctgggttttagtttgtttttttttttgtgcgacttaagtcatgaaacgtgagttaactcccacaaatttaacattagtgtgaattaactcaggtt 54528954  T
Q  187 gcgtaagttaacatgcatagggatattttggacatttac 225  Q
    |||| ||||||||||  ||||| ||||||||||||||||    
T  54528955 gcgtgagttaacatgtgtaggggtattttggacatttac 54528993  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 149100 - 149051
Alignment:
Q  121 gtgacttaagtcatgcagcgtgaattaactcacgaaaatttaacactagc 170  Q
    ||||||||||||||||| ||||| |||||||||| |||||||||||||||    
T  149100 gtgacttaagtcatgcaacgtgacttaactcacgcaaatttaacactagc 149051  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 26011953 - 26011994
Alignment:
Q  188 cgtaagttaacatgcatagggatattttggacatttactttg 229  Q
    ||||||||||||||||||| | |||||||| |||||||||||    
T  26011953 cgtaagttaacatgcatagaggtattttggtcatttactttg 26011994  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 26009443 - 26009399
Alignment:
Q  192 agttaacatgcatagggatattttggacatttactttggaaatga 236  Q
    ||||||||||| |||| ||||||||| |||||||||||| |||||    
T  26009443 agttaacatgcgtaggaatattttggtcatttactttgggaatga 26009399  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 30359781 - 30359733
Alignment:
Q  188 cgtaagttaacatgcatagggatattttggacatttactttggaaatga 236  Q
    |||||||||||| |||||||||  |||||||| |||||||||| |||||    
T  30359781 cgtaagttaacaagcatagggacgttttggacttttactttgggaatga 30359733  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 38790958 - 38790918
Alignment:
Q  193 gttaacatgcatagggatattttggacatttactttggaaa 233  Q
    |||||||||| ||||| |||||||||| |||||||||||||    
T  38790958 gttaacatgcgtaggggtattttggacttttactttggaaa 38790918  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 807122 - 807183
Alignment:
Q  109 tttttcttttgtgtgacttaagtcatgcagcgtgaattaactcacgaaaatttaacactagc 170  Q
    ||||| ||||| ||||||||||||| |||| |||| |||||||||| |||||||||||||||    
T  807122 ttttttttttgcgtgacttaagtcacgcagtgtgagttaactcacgcaaatttaacactagc 807183  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 35060900 - 35060943
Alignment:
Q  193 gttaacatgcatagggatattttggacatttactttggaaatga 236  Q
    |||||||||| |||||  ||||||||||||||||||||||||||    
T  35060900 gttaacatgcgtaggggcattttggacatttactttggaaatga 35060943  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 806739 - 806687
Alignment:
Q  68 aacaaaaccagcgtaagttaa-tcacgctgggttttagtgtgtttttcttttg 119  Q
    |||||||||||||| |||||| ||||| ||||||| ||||||||||| |||||    
T  806739 aacaaaaccagcgtgagttaactcacgttgggtttcagtgtgttttttttttg 806687  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 14153427 - 14153371
Alignment:
Q  193 gttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttg 249  Q
    |||||||||| ||||| |||||||| |||||||||||| ||||| || || ||||||    
T  14153427 gttaacatgcgtaggggtattttggtcatttactttgggaatgagcaaaatcatttg 14153371  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 27992303 - 27992365
Alignment:
Q  187 gcgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttg 249  Q
    |||| ||||||||||||||||| ||||||||||||||| ||| ||||||| || | |||||||    
T  27992303 gcgtgagttaacatgcataggggtattttggacatttattttagaaatgagcaaatccatttg 27992365  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 38677662 - 38677713
Alignment:
Q  188 cgtaagttaacatgcatagggatattttggacatttactttggaaatgaaca 239  Q
    |||||||||||||||  |||||||||||| | ||||||||||| ||||||||    
T  38677662 cgtaagttaacatgcgcagggatattttgaatatttactttgggaatgaaca 38677713  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 36217948 - 36217887
Alignment:
Q  188 cgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttg 249  Q
    ||||||||||||||| |||||  ||||||||| |||||||||| |||||  | |||||||||    
T  36217948 cgtaagttaacatgcgtaggggcattttggacttttactttgggaatgagtaaaaccatttg 36217887  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 38677017 - 38676956
Alignment:
Q  188 cgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttg 249  Q
    ||||||||||||||| ||| | ||||||||||||||| ||||| ||||| || |||| ||||    
T  38677017 cgtaagttaacatgcgtagaggtattttggacatttattttgggaatgagcaaaaccgtttg 38676956  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 37893008 - 37893069
Alignment:
Q  188 cgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttg 249  Q
    |||||||||||||||||||||  ||||||||| |||||||||| ||||| |  |||||||||    
T  37893008 cgtaagttaacatgcataggggcattttggacttttactttgggaatgagcgaaaccatttg 37893069  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 35841469 - 35841435
Alignment:
Q  194 ttaacatgcatagggatattttggacatttacttt 228  Q
    ||||||||| |||||||||||||||||||||||||    
T  35841469 ttaacatgcgtagggatattttggacatttacttt 35841435  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 37687331 - 37687373
Alignment:
Q  207 ggatattttggacatttactttggaaatgaacataaccatttg 249  Q
    |||||||||||||||||||||||||||||| |  |||||||||    
T  37687331 ggatattttggacatttactttggaaatgagcggaaccatttg 37687373  T

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