View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14424_high_7 (Length: 500)
Name: NF14424_high_7
Description: NF14424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14424_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 15 - 492
Target Start/End: Complemental strand, 34008022 - 34007528
Alignment:
| Q |
15 |
agaatggtcctttttacctcaatgatactcttggtaagcttccctttattat----------------aacctccatttgtcaaacttaat---aaatta |
95 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| ||||| ||||| |||||| |
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| T |
34008022 |
agaatggtcctttttacctcaatgatactctcggtaagcttccctttattatttataaaataaattataaactccattggtcaagattaatcataaatta |
34007923 |
T |
|
| Q |
96 |
ttgaggcatatatattattttataaatttaatatttacacactagtaagccctaacatatactccaatgttcatttagccttttacaatttgattgcacc |
195 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||| ||| |||||| ||||| || |
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| T |
34007922 |
ttgaggcatacatattattttataaatttaatatttatacactagtaaaccctaacatatactccaatgttgatttagcatttcacaattcgattgtac- |
34007824 |
T |
|
| Q |
196 |
ttacggtacgaattcttatatgatgttgatatttgatatttatgcatgtgtagttttcaaatatgatgctccaaatgcgacgagtttcccacacagcgta |
295 |
Q |
| |
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|||||| | |||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| |
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| T |
34007823 |
ttacggcatgaat-cttatataatgttgatatttgatatttatgcatgtgtagttttcaagtatgatgctccaaatgcaacaagtttcccacacagcgta |
34007725 |
T |
|
| Q |
296 |
tacatgtttccaacttgggaaagcttcatgaaatgtgatgtgaagaaggctaagatggtggcaaatcacacacaaggtgttggagagggattcaagttcg |
395 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34007724 |
tacatgtttccaacttggcaaagcttcatgaaatgtgatgtgaagaaggctaagatggtggcaaatcacacacaaggtgttggagagggattcaagttcg |
34007625 |
T |
|
| Q |
396 |
tgttaaacaaatggaagccttattacttttcatgtggtgagaaaaatggattacattgcaacctcggacaaatgaagttcgctgttatgcctatgct |
492 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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|
| T |
34007624 |
tgttaaacaagtggaagccttattacttttcatgtggtgagaaaaatggattacattgcaacgtcggacaaatgaagttcgctgttatgccaatgct |
34007528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 87 - 486
Target Start/End: Complemental strand, 33995383 - 33994992
Alignment:
| Q |
87 |
aataaattattgaggcatatatattattttataaatttaatatttacacacta----gtaagccctaacatatactccaatgttcatttagccttttaca |
182 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| |||||||| ||| || |||||| |||||| || ||||||||| ||||||| |
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| T |
33995383 |
aataaatcattgaggcatatatattattttataaatt-aatatttatacattactcagtaagctctaacacat----------tcatttagcattttaca |
33995295 |
T |
|
| Q |
183 |
atttgattgcaccttacggtacgaattcttatatgatgttgatatttgatatttatgcatgtgtagttttcaaatatgatgctccaaatgcgacgagttt |
282 |
Q |
| |
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||||||||| || |||||| || |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||| |
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| T |
33995294 |
atttgattgtac-ttacgggacaaattattatatgatgttgatatttgatatttatccatgtgtagttttcaaatatgatgctccaaatgcaacaagttt |
33995196 |
T |
|
| Q |
283 |
cccacacagcgtatacatgtttccaacttgggaaagcttcatgaaatgtgatgtgaagaaggctaagatggtggcaaatcacacacaaggtgttggagag |
382 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33995195 |
cccacacagcgtatacatgtttccaacttggcaaagcttcatgaaatgtgatgtgaagaaggctaagatggtggcaaatcacacacaaggtgttggagag |
33995096 |
T |
|
| Q |
383 |
ggattcaagttcgtgttaaacaaatggaagccttattacttttcatgtggtgagaaaaatggattacattgcaacctcggacaaatgaagttcgctgtta |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||| ||| |
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| T |
33995095 |
ggattcaagttcgtgttaaacaaatggaagccttattacttttcatgtggtgagaaaaatggattacattgcaacgttggacaaatgaagtttgctatta |
33994996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 140 - 492
Target Start/End: Complemental strand, 34000099 - 33999749
Alignment:
| Q |
140 |
gtaagccctaacatatactccaatgttcatttagccttttacaatttgattgcaccttacggtacgaattcttatatgatgttgatatttgatatttatg |
239 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||||| ||||| || |||||| | |||| ||||||| |||||||||||||||||||||| |
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|
| T |
34000099 |
gtaagctctaacatatactccaatgttcatttagcattttacaattcgattgtac-ttacggcatgaat-cttatataatgttgatatttgatatttatg |
34000002 |
T |
|
| Q |
240 |
catgtgtagttttcaaatatgatgctccaaatgcgacgagtttcccacacagcgtatacatgtttccaacttgggaaagcttcatgaaatgtgatgtgaa |
339 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
34000001 |
catgtgtagttttcaagtatgatgctccaaatgcaacaagtttcccacacagtgtatacatgtttccaacttggcagagcttcatgaaatgtgatgtgaa |
33999902 |
T |
|
| Q |
340 |
gaaggctaagatggtggcaaatcacacacaaggtgttggagagggattcaagttcgtgttaaacaaatggaagccttattacttttcatgtggtgagaaa |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33999901 |
gaaggctaagatggtggcaaatcacacacaaggtgttggagagggattcaagttcgtgttaaacaaatggaagccttattacttttcatgtggtgagaaa |
33999802 |
T |
|
| Q |
440 |
aatggattacattgcaacctcggacaaatgaagttcgctgttatgcctatgct |
492 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| | |||||||| ||||| |
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|
| T |
33999801 |
aatggattacattgcaacgttggacaaatgaagtttacggttatgccaatgct |
33999749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 228 - 492
Target Start/End: Complemental strand, 34003381 - 34003117
Alignment:
| Q |
228 |
ttgatatttatgcatgtgtagttttcaaatatgatgctccaaatgcgacgagtttcccacacagcgtatacatgtttccaacttgggaaagcttcatgaa |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
34003381 |
ttgatatttatgcatgtgtagttttcaaatatgatgctccaaatgcgacgagtttcccacacagcgtatacatgtttccaacttggcagagcttcatgaa |
34003282 |
T |
|
| Q |
328 |
atgtgatgtgaagaaggctaagatggtggcaaatcacacacaaggtgttggagagggattcaagttcgtgttaaacaaatggaagccttattacttttca |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34003281 |
atgtgatgtgaagaaggctaagatggtggcaaatcacacacaaggtgttggagagggattcaagttcgtgttaaacaagtggaagccttattacttttca |
34003182 |
T |
|
| Q |
428 |
tgtggtgagaaaaatggattacattgcaacctcggacaaatgaagttcgctgttatgcctatgct |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||| | |||||||| ||||| |
|
|
| T |
34003181 |
tgtggtgagaaaaatggattacattgcaacgttggacaaatgaagtttacggttatgccaatgct |
34003117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 34003557 - 34003383
Alignment:
| Q |
15 |
agaatggtcctttttacctcaatgatactcttggtaagcttccctttattataacctccatttgtcaaacttaataaattattgaggcatatatattatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34003557 |
agaatggtcctttttacctcaatgatactcttggtaagcttccctttattataaactccatttgtcaaacttaataaattattgaggcatatatattatt |
34003458 |
T |
|
| Q |
115 |
ttataaatttaatatttacacactagtaagccctaacatatactccaatgttcatttagccttttacaatttgat |
189 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34003457 |
ttataaatttaatattaatacactagtaagccctaacatatactccaatgttcatttagccttttacaatttgat |
34003383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 235 - 486
Target Start/End: Complemental strand, 33989253 - 33989002
Alignment:
| Q |
235 |
ttatgcatgtgtagttttcaaatatgatgctccaaatgcgacgagtttcccacacagcgtatacatgtttccaacttgggaaagcttcatgaaatgtgat |
334 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||| | |||||||||||||||||| |
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|
| T |
33989253 |
ttatccatgtgtagttttcaaatatgatgctccaaatgcaaagagtttcccacacaacgtatacatgtttccaacttggcagagcttcatgaaatgtgat |
33989154 |
T |
|
| Q |
335 |
gtgaagaaggctaagatggtggcaaatcacacacaaggtgttggagagggattcaagttcgtgttaaacaaatggaagccttattacttttcatgtggtg |
434 |
Q |
| |
|
| || | |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| ||||||||| |
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|
| T |
33989153 |
cttaaaatggctaagatgttggcaaatcacacacaaggtgttggagaggggttcaagttcgtgttaaacaagtggaagccctattactttgcatgtggtg |
33989054 |
T |
|
| Q |
435 |
agaaaaatggattacattgcaacctcggacaaatgaagttcgctgttatgcc |
486 |
Q |
| |
|
|||||||| | || |||||||| | |||||||||||||| ||| ||||||| |
|
|
| T |
33989053 |
agaaaaataggttgcattgcaatgttggacaaatgaagtttgctattatgcc |
33989002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 33993406 - 33993353
Alignment:
| Q |
15 |
agaatggtcctttttacctcaatgatactcttggtaagcttccctttattataa |
68 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| | ||| ||||||||||| |
|
|
| T |
33993406 |
agaatggtcctttttacctcaacgatactctcggtatggttcactttattataa |
33993353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 33995439 - 33995387
Alignment:
| Q |
15 |
agaatggtcctttttacctcaatgatactcttggtaagcttccctttattata |
67 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||| ||||| |||| |
|
|
| T |
33995439 |
agaatggtcctttttacgtcaatgatactctcagtaagcttcactttaatata |
33995387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 34000132 - 34000093
Alignment:
| Q |
15 |
agaatggtcctttttacctcaatgatactcttggtaagct |
54 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||| |
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|
| T |
34000132 |
agaatggtcctttttacctcaatgataccctcggtaagct |
34000093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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