View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14424_low_10 (Length: 468)
Name: NF14424_low_10
Description: NF14424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14424_low_10 |
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| [»] scaffold0053 (2 HSPs) |
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Alignment Details
Target: scaffold0053 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 244 - 452
Target Start/End: Original strand, 16579 - 16787
Alignment:
| Q |
244 |
tactttatttagtacttgtaggcactttttgaatagtactagtt-catacatgtggttttactaagaaatgaattattttgatacacaattttgacaaca |
342 |
Q |
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| T |
16579 |
tactttatttggtacttgtagccactttttgaatagtactagtttcatacatgtggttttactaagaaatgaattattttggtacacaattttgacaaca |
16678 |
T |
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| Q |
343 |
agtttaaatttgttaatgcatataacaaagtgnnnnnnnnatttattaatcatccactaaacgcagtcaattatgatttggaaccttattgactacaatt |
442 |
Q |
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| T |
16679 |
agtttaaatttgttaatgcatataacaaagtg-tttttttatttattaatcatccactaaacgcagtcaattatgatttggaaccttattgactacaatt |
16777 |
T |
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| Q |
443 |
ttttaggtgt |
452 |
Q |
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| T |
16778 |
ttttaggtgt |
16787 |
T |
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Target: scaffold0053; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 27 - 182
Target Start/End: Original strand, 16355 - 16517
Alignment:
| Q |
27 |
gagaaatcaatagggtaggaaaagaaggaatcttttacttttaccgttttttgaattcttgggtagtacttgattcacc--------gagctgtcaaaac |
118 |
Q |
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| T |
16355 |
gagaaatcaatagggtaggaaaagaaggagtcttttacttttactgttttttgaattcttgggtagtacttgattcaccgattggtagagctgtcaaaac |
16454 |
T |
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| Q |
119 |
cggctaataggaccgtttaatatcgatgtttgtaaagtggtctattttgacagctctagttgga |
182 |
Q |
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| T |
16455 |
gggctaatagga-cgtttaatatcgaggtttgtaaagtggtctattttgacagctctagttgga |
16517 |
T |
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