View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14424_low_12 (Length: 435)
Name: NF14424_low_12
Description: NF14424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14424_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 128 - 418
Target Start/End: Complemental strand, 53842630 - 53842340
Alignment:
| Q |
128 |
ttctgttcataatcttctttccaaccttccttttatcaacactgctaattcttcaccttcaaaagatgaattgttacgatccaaaattgctgtatgtttg |
227 |
Q |
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| T |
53842630 |
ttctgttcagaatcttctttccaaccttccttttatcaacactgctaattcttcaccttcaaaagatgaattgttacgatccaaaattgctgtatgtttg |
53842531 |
T |
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| Q |
228 |
gttggtggtgctagaagatttgaattaactggtccttcgatattggagatgatattaaaagagtatcctaattctgatctttttctgcatagtcctttag |
327 |
Q |
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| T |
53842530 |
gttggtggtgctagaagatttgaattaactggtccttcgatattggagatgatattaaaagagtatcctaattctgatctttttctgcatagtcctttag |
53842431 |
T |
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| Q |
328 |
actcagatgcgttcaaattctcattgttgaagcttgctccaaaagttgccgccgttaacatatttcaccctcaactgttgccggagaatga |
418 |
Q |
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| T |
53842430 |
actcagatgcgttcaaattctcattgttgaagcttgcaccaaaagttgccgccgttaacatatttcaccctcaaccgttgcaggagaatga |
53842340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 138 - 418
Target Start/End: Complemental strand, 53844320 - 53844043
Alignment:
| Q |
138 |
aatcttctttccaaccttccttttatcaacactgctaattcttcaccttcaaaagatgaattgttacgatccaaaattgctgtatgtttggttggtggtg |
237 |
Q |
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| T |
53844320 |
aatcttctgttcaacattccttacatcaacacggctaattc---accttcgaaagatgaattgttacgatccaaaattgcggtgtgtttggttggtggtg |
53844224 |
T |
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| Q |
238 |
ctagaagatttgaattaactggtccttcgatattggagatgatattaaaagagtatcctaattctgatctttttctgcatagtcctttagactcagatgc |
337 |
Q |
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| T |
53844223 |
ctagaaggttcgaattaacgggaccttcaatattggaaatgatactgaaagagtacccgaattcggatcttttcttgcatagtccgttagactcagattc |
53844124 |
T |
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| Q |
338 |
gttcaaattctcattgttgaagcttgctccaaaagttgccgccgttaacatatttcaccctcaactgttgccggagaatga |
418 |
Q |
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| T |
53844123 |
attcaagttctcatttctcaagtttgcgccaaatgttgctgctgttaaaatatttcgccctcaatagttccaggagaatga |
53844043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 53842757 - 53842696
Alignment:
| Q |
1 |
tgtatccatttactaaacggttttctgatattaattggcgtatccttgtgttgataattcct |
62 |
Q |
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| T |
53842757 |
tgtatccatttactaaacggttttctgatattaattggcgtatccttgtgttgataattcct |
53842696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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