View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14424_low_14 (Length: 394)
Name: NF14424_low_14
Description: NF14424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14424_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 20 - 316
Target Start/End: Original strand, 53639381 - 53639677
Alignment:
| Q |
20 |
taaaactggttaaatttcactgcaatagtaaaaataacaatacaatagaacgcttttggacattataaaaacaacttattttaattttatttgacaagtt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53639381 |
taaaactggttaaatttcactgcaatagaaaaaataacaatacaatagaacgctattggacattataaaaacaacttattttaattttatttgacaagtt |
53639480 |
T |
|
| Q |
120 |
tcgttaagtgcaacataaaaatggacaaacagacacattaatgatcatctttttaccaatactatataatggatatagtctgtaatatttaactcacata |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53639481 |
tcgttaagtgcaacataaaaatggacaaacagacacattaatgatcatctttttaccaatactatataatggatatagtctgtaatatttaactcacata |
53639580 |
T |
|
| Q |
220 |
aaaaagtcaatactgtgtgtggattttgtaaaactactctcaatcattttttgaataataacaccacaggcggcttagagtcattttttgactggac |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53639581 |
aaaaagtcaatactgtgtgtggattttgtaaaactactctcaatcattttttgaataataacaccacaggcggcttagagtcattttttgactggac |
53639677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 386
Target Start/End: Original strand, 53639693 - 53639745
Alignment:
| Q |
334 |
agaagactggacttctatcttggacgtcnnnnnnntacaaaatatcctttgct |
386 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
53639693 |
agaagactggacttctatcttggacgtcaaaataatacaaaatatcctttgct |
53639745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University