View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14424_low_16 (Length: 390)
Name: NF14424_low_16
Description: NF14424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14424_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 6 - 378
Target Start/End: Complemental strand, 36788459 - 36788087
Alignment:
| Q |
6 |
agtagcaaaggtgaggataaggcgaccattttgtcgcttagcgaagaagttattaggtgaaggaattgacacaacttgtaggaacaaagacaaccttcca |
105 |
Q |
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| T |
36788459 |
agtagcaaacgtgaggataaggcgaccattttgtcgcttagcgaagaatttattaggtgaaggaattgacacaacttgtaggaacaaagacaaccttcca |
36788360 |
T |
|
| Q |
106 |
ttgtcacggcggggcatcattttaagtggttggctatgactaaagagtgaaggaagcggaggaggataacaacgtggtttcttcaccatgtccgcctttt |
205 |
Q |
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| T |
36788359 |
ttgtcacggcggggcatcatttgaagtggttggctatgactaaagagtgaaggaagtggaggaggataacaacgtggtttcttcaccatgtccgcctttt |
36788260 |
T |
|
| Q |
206 |
ctttcaagttttcatcttcgtttgaattgttatcctcatatgatgtgtaagaagagaaaccatctgagccagtttctgacccaaggctctcggtgcaaat |
305 |
Q |
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| T |
36788259 |
ctttcaagttttcatcttcgtttgaattgttatcctcatatgatgtgtaagaagagaaaccatctgagccagtttctgatccaaggctctcggtgcaaat |
36788160 |
T |
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| Q |
306 |
ttcaagactcttttcacttaaataattttttgaatttttcacaagtgggtgaatataaggaggagtttttgat |
378 |
Q |
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| T |
36788159 |
ttcaagactcttagcacttagataattgtttgaatttttcacaagtggatgaatataaggaggagtttttgat |
36788087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 36760451 - 36760091
Alignment:
| Q |
18 |
gaggataaggcgaccattttgtcgcttagcgaagaagttattaggtgaaggaattgacacaacttgtaggaacaaagacaaccttccattgtcacggcgg |
117 |
Q |
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| T |
36760451 |
gaggacaagacgaccattttgtcgcttggtgaagaagttattatgtgaaggaactgacacaacttgtaggaacaaaaacagccttccattgtcacgttgg |
36760352 |
T |
|
| Q |
118 |
ggcatcattttaagtggttggctatgactaaagagtgaaggaagcggaggaggataacaacgtggtttcttcaccatgtccgccttttctttcaagtttt |
217 |
Q |
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| T |
36760351 |
ggtgtcatttgaagtggttggctttgactaaaaagtgaaggaagtggaggaggaaaacaacgaatcttcttcaccatgtccaccttttctttcaagtttt |
36760252 |
T |
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| Q |
218 |
catcttcgtttgaattgttatcctcatatgatgtgtaagaagagaaaccatctgagccagtttctgacccaaggctctcggtgcaaatttcaagactctt |
317 |
Q |
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| T |
36760251 |
catcatcatttgaattgttatcttcagatgatgtgtaagaagagaaaccatctgagccagtttctgatccaaggctctcggtgcaaatttcaagactctt |
36760152 |
T |
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| Q |
318 |
ttcacttaaataattttttgaatttttcacaagtgggtgaatataaggaggagtttttgat |
378 |
Q |
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| T |
36760151 |
agcacttagataattgtttgaatttttcacaagtggatgaatataaggaggagtttttgat |
36760091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 378
Target Start/End: Complemental strand, 36775778 - 36775405
Alignment:
| Q |
8 |
tagcaaaggtgaggataaggcgaccattttgtcgcttagcgaagaagttattaggtgaaggaattgacacaacttgtaggaacaaagacaaccttccatt |
107 |
Q |
| |
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||||||| ||||| |||||||||||||||||||||||||| |||||||| ||| |||| |||| ||||| |||| |||||||||| |||| |||||||| |
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| T |
36775778 |
tagcaaatgtgagtataaggcgaccattttgtcgcttagccaagaagttgttatgtgatggaaccgacactacttctaggaacaaaaacaatcttccatt |
36775679 |
T |
|
| Q |
108 |
gtcacggcggggcatcattttaagtggttggctatgactaaagagtgaaggaagcggaggaggataacaacgtggtttcttcaccatgtccgccttttct |
207 |
Q |
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||||||| ||||| ||||||| |||||||| || |||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| | |||||||| |
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| T |
36775678 |
gtcacggtggggcctcattttgagtggttgactttgactaaagagtaaaggaagtggaggaggaaaacaacgtggtttcttcaccatgttcaccttttct |
36775579 |
T |
|
| Q |
208 |
ttcaagttttcatcttcgtttgaattgttatcctcatatgatgtgtaagaag---agaaaccatctgagccagtttctgacccaaggctctcggtgcaaa |
304 |
Q |
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||||| |||||| | || || ||||| ||||| ||| ||||||||||||||| |||| |||||||| ||| ||||||| ||||| |||| ||||| | |
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| T |
36775578 |
ttcaatttttcaccatccttggaattattatcttcaaatgatgtgtaagaagaaaagaacccatctgatccattttctgatccaagaatctcagtgcaca |
36775479 |
T |
|
| Q |
305 |
tttcaagactcttttcacttaaataattttttgaatttttcacaagtgggtgaatataaggaggagtttttgat |
378 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36775478 |
tttcaagactcttttcacttaaataattttgtgaatttttcacaagtgggtgaatataaggaggagtttttgat |
36775405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 16 - 377
Target Start/End: Complemental strand, 36796847 - 36796491
Alignment:
| Q |
16 |
gtgaggataaggcgaccattttgtcgcttagcgaagaagttattaggtgaaggaattgacacaacttgtaggaacaaagacaaccttccattgtcacggc |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
36796847 |
gtgaggataaggcgaccattttgtcgcttagcgaagaagtagttgtgtgaaggaacctgcacaacttgtaggaacaaa---aaccttccattgtcacggt |
36796751 |
T |
|
| Q |
116 |
ggggcatcattttaagtggttggctatgactaaagagtgaaggaagcggaggaggataacaacgtggtttcttcaccatgtccgccttttctttcaagtt |
215 |
Q |
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|| || | | | ||| || ||||| |||||||||||| | |||||||||| |||||||||||||||||||| | | |||||||||| || |
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| T |
36796750 |
ggttgat--tctgaccatgttcactttgacttgtgagtgaaggaagtgaaggaggataagaacgtggtttcttcaccatgctcactatttctttcaattt |
36796653 |
T |
|
| Q |
216 |
ttcatcttcgtttgaattgttatcctcatatgatgtgtaagaagagaaaccatctgagccagtttctgacccaaggctctcggtgcaaatttcaagactc |
315 |
Q |
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| T |
36796652 |
ttcatcataattggagttgttatcttcaaatgatgtgtaagaagagaatccatctgaactgctttgagagccaagactctcggtgcagattttgagactc |
36796553 |
T |
|
| Q |
316 |
ttttcacttaaataattttttgaatttttcacaagtgggtgaatataaggaggagtttttga |
377 |
Q |
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| T |
36796552 |
ttttcacttaaatagttttttgaatttttcacaagtgggtgaatataaggaggagtttttga |
36796491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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