View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14424_low_17 (Length: 357)
Name: NF14424_low_17
Description: NF14424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14424_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 325
Target Start/End: Original strand, 35831217 - 35831530
Alignment:
| Q |
13 |
gagatgtgggaaagagtttgttattgtaatattttgtttgagaagtttgatgaaaaatgaaaaacatataactggtaacagagtcaaaactacgcttaaa |
112 |
Q |
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| T |
35831217 |
gagatttgggaaagagtttgttattgtaatattttgtttgagaagtttgatgaaaaatgaaaaacatataactggtaacagagtcaaaactacgcttaaa |
35831316 |
T |
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| Q |
113 |
atgcccaaatcttctacttatgtaaaaactcgcatctttcccatannnnnnn-cctctctttgaaaccttccctttgcaattgtaatcaagtcggaaata |
211 |
Q |
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| T |
35831317 |
atgcccaaatcttctacttatgtaaaaactcgcatctttcccattttttttttcctctctttgaaaccttccctttgcaattgtaatcaagtcggaaata |
35831416 |
T |
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| Q |
212 |
ggtttaatggttcgggtgatatatctagagaattcaaggttgtgaattgtcgcttggtgttaacaacacattccctttttgtttttgtttatggagttga |
311 |
Q |
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| T |
35831417 |
ggtttaatggttcgggtgatatatctagagaattcaaggttgtgaattgtcgcttggtgttaacaacacattccctttttgtttttgtttatggagttga |
35831516 |
T |
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| Q |
312 |
agttgaagttgaag |
325 |
Q |
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| T |
35831517 |
agttgaagttgaag |
35831530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 341
Target Start/End: Original strand, 35831517 - 35831552
Alignment:
| Q |
306 |
agttgaagttgaagttgaagatcgtaggattcctag |
341 |
Q |
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| T |
35831517 |
agttgaagttgaagttgaagatcgtaggattcctag |
35831552 |
T |
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