View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14424_low_19 (Length: 323)
Name: NF14424_low_19
Description: NF14424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14424_low_19 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 323
Target Start/End: Complemental strand, 29480262 - 29479947
Alignment:
| Q |
8 |
actgcattttcagctggtccaaggtaaattgtttgacccccagaaagtagaaatagatcatcaaataatgcaaaaacctcactacttggttgatgaattg |
107 |
Q |
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| T |
29480262 |
actgcattttcagctggtccaaagtaaattgtttgacccccagaaagtagaaatagatcatcaaataatgcaaaaacctcactacttggttgatgaattg |
29480163 |
T |
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| Q |
108 |
aagaaataacagttttcccatcatgagcaatgtttctcaaagtttgagcaacaaaatatgctgaggcactgtccaaaccacttgttggctcatcaaggaa |
207 |
Q |
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| T |
29480162 |
aagaaataacagttttcccatcatgagcaatgtttctcaaagtttgagcaacaaaatatgctgaggcactgtccaaaccacttgttggctcatcaaggaa |
29480063 |
T |
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| Q |
208 |
caagagacatggcctagtaagaatttcaagtgctatgctagttcttttcttttctccaccacttatacctcttaagtgccaatttcctataagtctatca |
307 |
Q |
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| T |
29480062 |
caagagacatggcctagtaagaatttcaagtgctatgctagttcttttcttttctccaccacttatacctcttaagtgccaatttcctataagtctatca |
29479963 |
T |
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| Q |
308 |
gcacaatcttgaagac |
323 |
Q |
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| T |
29479962 |
gcacaatcttgaagac |
29479947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 62 - 297
Target Start/End: Complemental strand, 29465988 - 29465753
Alignment:
| Q |
62 |
agatcatcaaataatgcaaaaacctcactacttggttgatgaattgaagaaataacagttttcccatcatgagcaatgtttctcaaagtttgagcaacaa |
161 |
Q |
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| T |
29465988 |
agatcatcaaaaagtgcaaagacttcactgctaggctgatgaatagaagaaataacagtccttccatcacgagcaacatttctaagagtttggacaacaa |
29465889 |
T |
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| Q |
162 |
aatatgctgaggcactgtccaaaccacttgttggctcatcaaggaacaagagacatggcctagtaagaatttcaagtgctatgctagttcttttcttttc |
261 |
Q |
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| T |
29465888 |
aaaatgcagaagcactgtccaaaccactagtcggttcatcaagaaacagcaaccgaggccttgtgagaatctcaagtgcaatgctagttcttttcctttc |
29465789 |
T |
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| Q |
262 |
tccaccacttatacctcttaagtgccaatttcctat |
297 |
Q |
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| T |
29465788 |
gccaccacttatacctctcaaatgccagttacctat |
29465753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 76 - 279
Target Start/End: Complemental strand, 29433143 - 29432940
Alignment:
| Q |
76 |
tgcaaaaacctcactacttggttgatgaattgaagaaataacagttttcccatcatgagcaatgtttctcaaagtttgagcaacaaaatatgctgaggca |
175 |
Q |
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|||||| || |||||| | || ||||||||||||||||||||||| | |||||||||||||| ||||| | ||||||| |||||||| |||| || ||| |
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| T |
29433143 |
tgcaaatacttcactattgggctgatgaattgaagaaataacagtccttccatcatgagcaatatttctgagagtttgaacaacaaaaaatgcagaagca |
29433044 |
T |
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| Q |
176 |
ctgtccaaaccacttgttggctcatcaaggaacaagagacatggcctagtaagaatttcaagtgctatgctagttcttttcttttctccaccacttatac |
275 |
Q |
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| T |
29433043 |
ctatctaagccacaagttggttcatcaagaaacaacaaacgaggctttgtgagaatctcaagtgcaatgctagttcttttcctttcaccgccgcttatac |
29432944 |
T |
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| Q |
276 |
ctct |
279 |
Q |
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|||| |
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| T |
29432943 |
ctct |
29432940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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