View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14424_low_2 (Length: 636)
Name: NF14424_low_2
Description: NF14424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14424_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 473; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 16 - 618
Target Start/End: Complemental strand, 38851665 - 38851060
Alignment:
| Q |
16 |
aagaaaatatgtgaaggatagaaatggtattcacaaatactaactgctcatttacttgtctcgtcgtttttcgtcgccactttttcgtaccagagcaatt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
38851665 |
aagaaaatatgtgaaggatagaaatggtattcacaaatactaactgctcatttacttgtctcgttgtttttcgtcgccactttttcgtaccagagtaatt |
38851566 |
T |
|
| Q |
116 |
tccgacattaaatcatcatagaaaatcctagatgaagacataggacatgcatgtttactagtttatactattagcat---aggctgactaatctatannn |
212 |
Q |
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|| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
38851565 |
tctgaaattaaatcatcatagaaaatcctagatgaagacataggacatgcatgttaactagtttatactattagcattataggctgactaatctatattt |
38851466 |
T |
|
| Q |
213 |
nnnnn---aataaacttattataggtacaaaacatactagggtaatttatactaattagtttttt-gttttctttcattctttgctcaacacaatatata |
308 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38851465 |
ttttttttaataaacttattataggtacaaagcatactagggtaatttatactatttagtttttttgttttctttcattctttgctcaacacaatatata |
38851366 |
T |
|
| Q |
309 |
tgtattctcttggttcaaaacttcaaataattaactacaccataatcttattagaaaaaatgaattaataacttcaactgaagtatttttacaattgagg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38851365 |
tgtattctcttggttcaaaacttcaaataattaactacaccataatcttattagaaaaaatgaattaataacttcaactgaagtatttttacaattaagg |
38851266 |
T |
|
| Q |
409 |
tcaaagtaaagcaaagaaagtttctttctcaaacataattaattatcttatatttccctatagttacgctccaaagcttgaggttctagtggttggatcg |
508 |
Q |
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| T |
38851265 |
tcaaagtaaagcaaataaagtctctttctcaacca----taattatcttatatttccctatagttacgctccaaagcttgaggttctagtggttggatag |
38851170 |
T |
|
| Q |
509 |
ttataatagtttctggcactggcaacacaattggttgcacctgcgacccaccaatctttcgacaagtttcaagaagacattgtctacactttggacatga |
608 |
Q |
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| T |
38851169 |
ttataatagtttctggcactggcaacacaattggttgcacttgcgacccaccaatctttcgacaagtttcaagaagacattgtctgcactttggacatga |
38851070 |
T |
|
| Q |
609 |
tgagtgttct |
618 |
Q |
| |
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||| |||||| |
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| T |
38851069 |
tgaatgttct |
38851060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 392 - 618
Target Start/End: Original strand, 38840622 - 38840844
Alignment:
| Q |
392 |
tatttttacaattgaggtcaaagtaaagcaaagaaagtttctttctcaaacataattaattatcttatatttccctatagttacgctccaaagcttgagg |
491 |
Q |
| |
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| T |
38840622 |
tatttctacatttgagatcaaagtaaagcaaagaaagtttcttgctcaaccataat----tatcttatatttccctatagttacgttccaaagcttcgtg |
38840717 |
T |
|
| Q |
492 |
ttctagtggttggatcgttataatagtttctggcactggcaacacaattggttgcacctgcgacccaccaatctttcgacaagtttcaagaagacattgt |
591 |
Q |
| |
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|||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38840718 |
ctctagtggttcgatccttataataatttctggcactggcaacacaattggttgcacctgcgacccaccaatctttcgacaagtttcaagaagacattgt |
38840817 |
T |
|
| Q |
592 |
ctacactttggacatgatgagtgttct |
618 |
Q |
| |
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|| ||||||||||||||||| |||||| |
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| T |
38840818 |
ctgcactttggacatgatgaatgttct |
38840844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 459 - 618
Target Start/End: Original strand, 38861297 - 38861456
Alignment:
| Q |
459 |
tatttccctatagttacgctccaaagcttgaggttctagtggttggatcgttataatagtttctggcactggcaacacaattggttgcacctgcgaccca |
558 |
Q |
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|||||| ||||||||||| |||||||||| | |||||||||| ||| ||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
38861297 |
tatttctctatagttacgttccaaagcttcgtgctctagtggttctatccttataatagtttctggcactggcaacaaaattggttgcacttgcgaccca |
38861396 |
T |
|
| Q |
559 |
ccaatctttcgacaagtttcaagaagacattgtctacactttggacatgatgagtgttct |
618 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
38861397 |
ccaatctttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttct |
38861456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 501 - 618
Target Start/End: Original strand, 38858465 - 38858582
Alignment:
| Q |
501 |
ttggatcgttataatagtttctggcactggcaacacaattggttgcacctgcgacccaccaatctttcgacaagtttcaagaagacattgtctacacttt |
600 |
Q |
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|||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38858465 |
ttggattgctataataatttctggcactggcaacacaattggttgcacctgcgacccaccaatctttcgacaagtttcaagaagacattgtctgcacttt |
38858564 |
T |
|
| Q |
601 |
ggacatgatgagtgttct |
618 |
Q |
| |
|
||||||||||| |||||| |
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| T |
38858565 |
ggacatgatgaatgttct |
38858582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 447 - 617
Target Start/End: Original strand, 38864743 - 38864910
Alignment:
| Q |
447 |
ttaattatcttatatttccctatagttacgctccaaagcttgaggttctagtggttggatcgttataatagtttctggcactggcaacacaattggttgc |
546 |
Q |
| |
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||||||| ||||||||| ||||||||||| |||||||||| | | || |||||||||||| |||||| |||||| | ||||||| ||||||||||| |
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| T |
38864743 |
ttaattagtttatatttctctatagttacgttccaaagcttcatgctcaagtggttggatccttataacggtttctagtactggcataacaattggttgt |
38864842 |
T |
|
| Q |
547 |
acctgcgacccaccaatctttcgacaagtttcaagaagacattgtctacactttggacatgatgagtgttc |
617 |
Q |
| |
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|| |||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38864843 |
---tgtgaccgaacaatctttctacaagtttcaagaagacattgtctacactttggacatgatgggtgttc |
38864910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 391 - 432
Target Start/End: Original strand, 38861137 - 38861178
Alignment:
| Q |
391 |
gtatttttacaattgaggtcaaagtaaagcaaagaaagtttc |
432 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38861137 |
gtatttttacatttgaggtcaaagtaaagcaaagaaagtttc |
38861178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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