View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14424_low_24 (Length: 257)
Name: NF14424_low_24
Description: NF14424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14424_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 50554636 - 50554379
Alignment:
| Q |
1 |
agttcagacaaatgcgcttgttttctccaccttgacctcctggctgactcgcaattagaatccttcctgaaaccatgtcatgaatcattattatatcata |
100 |
Q |
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| T |
50554636 |
agttcagacaaatgcgcttgttttctccaccttgacctcctggctgactcgcaattagaatccttcctgaaaccatgtcatgaatcattattatatcata |
50554537 |
T |
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| Q |
101 |
atttgaaaaccacatataataag----------------aagttagacggaaataccttctttggcgtttcatatcaactggatttgtaatttgttcaca |
184 |
Q |
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| T |
50554536 |
atttgaaaaccaaatataataagaaaagtgttgtatttaaagttagacggaaataccttctttggcgtttcatatcaactggatttgtaatttgttcaca |
50554437 |
T |
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| Q |
185 |
aggacctgattcattatcttcatcggatggatccgatgaaccacttgctgtccctttg |
242 |
Q |
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| T |
50554436 |
aggacctgattcattatcttcatcggatggatccgatgaaccacttgctgtccctttg |
50554379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 50817062 - 50816972
Alignment:
| Q |
1 |
agttcagacaaatgcgcttgttttctccaccttgacctcctggctgactcgcaattagaatccttcctgaaaccatgtcatgaatcattat |
91 |
Q |
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| T |
50817062 |
agttcaaacaaatgcgcttgttttctccgccttgatctcctggctgacttgggatttgaaaccttcctgaaaccatgtcatgaatcattat |
50816972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 50858802 - 50858892
Alignment:
| Q |
1 |
agttcagacaaatgcgcttgttttctccaccttgacctcctggctgactcgcaattagaatccttcctgaaaccatgtcatgaatcattat |
91 |
Q |
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| T |
50858802 |
agttcaaacaaatgcgcttgttttctccgccttgatctcctggctgacttgggatttgaaaccttcctgaaaccatgtcatgaatcattat |
50858892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 1131520 - 1131584
Alignment:
| Q |
153 |
ttcatatcaactggatttgtaatttgttcacaaggacctgattcattatcttcatcggatggatc |
217 |
Q |
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| T |
1131520 |
ttcatatcaacagggtttgtactttgttcacaaggacctgcttcatcatcttcatcagatggatc |
1131584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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