View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14424_low_26 (Length: 248)
Name: NF14424_low_26
Description: NF14424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14424_low_26 |
 | |
|
| [»] scaffold0692 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 17)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 10216932 - 10216706
Alignment:
| Q |
1 |
atttaaagctctagtgttttattacatgaaaaatggaagctagcttagaacaatggttgcatcctgagattttaaattcagagcatccaaaaacattgga |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10216932 |
atttaaagctctagttttttattacatgaaaaatggaagct----tagaacaatggttgcatcctgagattttaaattcagagcatccaaaaacattgga |
10216837 |
T |
|
| Q |
101 |
ccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagcca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10216836 |
ccttggtcataggttaaacatcattatcgatgttgcttcggcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagcca |
10216737 |
T |
|
| Q |
201 |
agcaatgttcttctgaatgatgacatggttg |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
10216736 |
agcaatgttcttctgaatgatgacatggttg |
10216706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 11048840 - 11048614
Alignment:
| Q |
1 |
atttaaagctctagtgttttattacatgaaaaatggaagctagcttagaacaatggttgcatcctgagattttaaattcagagcatccaaaaacattgga |
100 |
Q |
| |
|
||||||||| ||||| ||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11048840 |
atttaaagcactagtttttgattacatgaaaaatggaagct----tagaacaatggttacatcctgagattttaaattcagagcatccaaaaacattgga |
11048745 |
T |
|
| Q |
101 |
ccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagcca |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11048744 |
ccttggtgataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagcca |
11048645 |
T |
|
| Q |
201 |
agcaatgttcttctgaatgatgacatggttg |
231 |
Q |
| |
|
|| ||||||||||| || || |||||||||| |
|
|
| T |
11048644 |
agtaatgttcttcttaacgacgacatggttg |
11048614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 10717122 - 10716897
Alignment:
| Q |
2 |
tttaaagctctagtgttttattacatgaaaaatggaagctagcttagaacaatggttgcatcctgagattttaaattcagagcatccaaaaacattggac |
101 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||| ||||||| |||||||||| |
|
|
| T |
10717122 |
tttaaagctctagtttttgattacatgaaaaatggaagct----tagaacaatggttgcatcttgagattttaaatgcagatcatccaagaacattggac |
10717027 |
T |
|
| Q |
102 |
cttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaa |
201 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| || |||||||||||||||| || ||||||||||| ||||| || |||||||||||||| ||||||| |
|
|
| T |
10717026 |
cttggtcatagattaaacatcatgatcgatgtcgccactgcattacattatcttcaccaagaatgtgaacaattaatcattcattgtgatcttaagccaa |
10716927 |
T |
|
| Q |
202 |
gcaatgttcttctgaatgatgacatggttg |
231 |
Q |
| |
|
||||||| ||||| ||||||||||||||| |
|
|
| T |
10716926 |
gcaatgtccttcttgatgatgacatggttg |
10716897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 10604778 - 10605004
Alignment:
| Q |
1 |
atttaaagctctagtgttttattacatgaaaaatggaagctagcttagaacaatggttgcatcctgagattttaaattcagagcatccaaaaacattgga |
100 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||| ||| ||||| |
|
|
| T |
10604778 |
atttaaagctctagtttttgattacatgaaaaatggaagct----tagaacaatggttgcatcctgagattttaaatgcagagcctccaacaacgttgga |
10604873 |
T |
|
| Q |
101 |
ccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagcca |
200 |
Q |
| |
|
||||||| | || || ||||||||| | ||||||||||||||||| |||||||| |||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
10604874 |
ccttggtaaaagatttaacatcatttttgatgttgcttctgcattgcattatcttcatcaagaatgtgagcaattagtcattcattgtgatctaaagcca |
10604973 |
T |
|
| Q |
201 |
agcaatgttcttctgaatgatgacatggttg |
231 |
Q |
| |
|
|||||||| || || ||||||| ||||||| |
|
|
| T |
10604974 |
agcaatgtcctacttgatgatgatatggttg |
10605004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 10740881 - 10740656
Alignment:
| Q |
2 |
tttaaagctctagtgttttattacatgaaaaatggaagctagcttagaacaatggttgcatcctgagattttaaattcagagcatccaaaaacattggac |
101 |
Q |
| |
|
||||||||||| || ||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||| ||||||| |||||||||| |
|
|
| T |
10740881 |
tttaaagctcttgtttttgattacatgaaaaatggaagct----tagaacaatggttgcatcttgagattttaaatgcagatcatccaagaacattggac |
10740786 |
T |
|
| Q |
102 |
cttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaa |
201 |
Q |
| |
|
||||||||||| ||||||||||| | |||||| || |||||||||||||||| || ||||||||||| |||||| | ||||||||||||||||||||| |
|
|
| T |
10740785 |
cttggtcatagattaaacatcatgaacgatgtcgccactgcattacattatcttcaccaagaatgtgaacaattggtccttcattgtgatctaaagccaa |
10740686 |
T |
|
| Q |
202 |
gcaatgttcttctgaatgatgacatggttg |
231 |
Q |
| |
|
||||||| ||||| ||||||||||||||| |
|
|
| T |
10740685 |
gcaatgtccttcttgatgatgacatggttg |
10740656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 10747197 - 10746972
Alignment:
| Q |
2 |
tttaaagctctagtgttttattacatgaaaaatggaagctagcttagaacaatggttgcatcctgagattttaaattcagagcatccaaaaacattggac |
101 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| || ||| |
|
|
| T |
10747197 |
tttaaagctctagttttttattacataaaaaatggaagct----tagaacaatggttgcatcctgagtttttaaatgaagagcatccaaaaacgttagac |
10747102 |
T |
|
| Q |
102 |
cttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaa |
201 |
Q |
| |
|
||||| || || |||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||| | ||||| |||||||| ||||||| |
|
|
| T |
10747101 |
cttggccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattcactgtgatctcaagccaa |
10747002 |
T |
|
| Q |
202 |
gcaatgttcttctgaatgatgacatggttg |
231 |
Q |
| |
|
||||||| ||||| ||||||||||||||| |
|
|
| T |
10747001 |
gcaatgtccttcttgatgatgacatggttg |
10746972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 10581030 - 10581228
Alignment:
| Q |
1 |
atttaaagctctagtgttttattacatgaaaaatggaagctagcttagaacaatggttgcatcctgagattttaaattcagagcatccaaaaacattgga |
100 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||| || | |||| | || || ||||||| | |
|
|
| T |
10581030 |
atttaaagctttagttttttattacatgaaaaatggaagct----tagaacaatggttgcatcctcagattt-aagtgcagaacctctaacaacattgaa |
10581124 |
T |
|
| Q |
101 |
ccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagcca |
200 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||| | ||| |||||||||||||||| |
|
|
| T |
10581125 |
ccttggtcatagattaaacatcattatggatgttgcttctgcattacattatcttcatcgagaatgtgagcaattggtccttcgttgtgatctaaagcca |
10581224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 10565053 - 10565279
Alignment:
| Q |
1 |
atttaaagctctagtgttttattacatgaaaaatggaagctagcttagaacaatggttgcatcctgagattttaaattcagagcatccaaaaacattgga |
100 |
Q |
| |
|
|||||||||||| || ||| | ||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| | |||| ||||||||| |
|
|
| T |
10565053 |
atttaaagctctggtttttgagtacatgaaaaatggaagct----tagatcaatggttgcatcctgagattttaaatgcagaacccccaacaacattgga |
10565148 |
T |
|
| Q |
101 |
ccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagcca |
200 |
Q |
| |
|
| ||| |||||| ||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||||| | ||||||||||||||||||||| |
|
|
| T |
10565149 |
ctttgctcatagattatacattattatcgatgttgcttctgcattacattatcttcatagagaatgtgaagaattggtcattcattgtgatctaaagcca |
10565248 |
T |
|
| Q |
201 |
agcaatgttcttctgaatgatgacatggttg |
231 |
Q |
| |
|
|||||| | ||||| | ||||||||||||| |
|
|
| T |
10565249 |
agcaatatccttcttgacgatgacatggttg |
10565279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 10611736 - 10611962
Alignment:
| Q |
1 |
atttaaagctctagtgttttattacatgaaaaatggaagctagcttagaacaatggttgcatcctgagattttaaattcagagcatccaaaaacattgga |
100 |
Q |
| |
|
||||||||| ||||| ||| ||||||||||||||||||||| ||||||||||||||||||| || |||||||| ||||||| || ||||||||| |
|
|
| T |
10611736 |
atttaaagccctagtttttgattacatgaaaaatggaagct----tagaacaatggttgcatcccaaggttttaaatgaagagcatacagcaacattgga |
10611831 |
T |
|
| Q |
101 |
ccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagcca |
200 |
Q |
| |
|
||| ||||||| |||||||||||||| ||||||| |||||||||||||||||| ||| | ||||||||||||||| | ||||||||||| |||||||| |
|
|
| T |
10611832 |
cctcagtcatagattaaacatcattatggatgttggttctgcattacattatcttcataatgaatgtgagcaattggtccttcattgtgatataaagcca |
10611931 |
T |
|
| Q |
201 |
agcaatgttcttctgaatgatgacatggttg |
231 |
Q |
| |
|
|||||||| || || ||||||| ||||||| |
|
|
| T |
10611932 |
agcaatgtcctacttgatgatgatatggttg |
10611962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 10763316 - 10763090
Alignment:
| Q |
1 |
atttaaagctctagtgttttattacatgaaaaatggaagctagcttagaacaatggttgcatcctgagattttaaattcagagcatccaaaaacattgga |
100 |
Q |
| |
|
|||||||||||| || ||| ||||||||||||||||||||| |||||| |||| |||| ||| || ||||||| ||||| ||||| ||||||||| |
|
|
| T |
10763316 |
atttaaagctctggtttttgattacatgaaaaatggaagct----tagaacgatggctgcaccctaggaatttaaatgcagagactccaacaacattgga |
10763221 |
T |
|
| Q |
101 |
ccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagcca |
200 |
Q |
| |
|
|||| ||| || | || |||||||| |||||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
10763220 |
tcttgatcaaagactgaatatcattattgatgttgcttctgcattacattatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagcca |
10763121 |
T |
|
| Q |
201 |
agcaatgttcttctgaatgatgacatggttg |
231 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| |
|
|
| T |
10763120 |
agcaatgtccttcttgatgatgacatggttg |
10763090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 10588613 - 10588387
Alignment:
| Q |
1 |
atttaaagctctagtgttttattacatgaaaaatggaagctagcttagaacaatggttgcatcctgagattttaaattcagagcatccaaaaacattgga |
100 |
Q |
| |
|
|||||||||| |||| ||| ||||||||||||||||||| | ||||||||||| | ||||| || | | |||||||||||||||| ||| ||||| |
|
|
| T |
10588613 |
atttaaagctttagtttttgattacatgaaaaatggaagtt----tagaacaatggcttcatccatggaatgtgaattcagagcatccaagaacgttgga |
10588518 |
T |
|
| Q |
101 |
ccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagcca |
200 |
Q |
| |
|
||||| |||||| ||||| |||| ||||||| ||||||||||| |||||||||| ||||| ||||||||||| || | ||||||||||| |||||||| |
|
|
| T |
10588517 |
ccttgttcatagattaaatatcactatcgatattgcttctgcactacattatcttcatcatgaatgtgagcaggtggtccttcattgtgatataaagcca |
10588418 |
T |
|
| Q |
201 |
agcaatgttcttctgaatgatgacatggttg |
231 |
Q |
| |
|
||||| || ||||| | ||||||||||||| |
|
|
| T |
10588417 |
agcaacgtccttcttgacgatgacatggttg |
10588387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 19606044 - 19605845
Alignment:
| Q |
5 |
aaagctctagtgttttattacatgaaaaatggaagctagcttagaacaatggttgcatcctgagattttaaattcagagcatccaaaaacattggacctt |
104 |
Q |
| |
|
||||||||||| ||| | ||||||| ||||||||||| ||||||||||||||||||| | || | ||| |||| ||||||| ||||||| | || |
|
|
| T |
19606044 |
aaagctctagtttttgagtacatgagaaatggaagct----tagaacaatggttgcatcccgggacaatgaatgcagatcatccaagaacattgaagttt |
19605949 |
T |
|
| Q |
105 |
ggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagca |
204 |
Q |
| |
|
| || || ||||| ||| || |||||||| |||||||||||||||| || ||||| ||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
19605948 |
gagcaaagattaaatatccttgtcgatgtttcttctgcattacattaccttcatcatgaatgtgagcaattggtccttcattgtgatctaaagccaagca |
19605849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 10559043 - 10559131
Alignment:
| Q |
120 |
atcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgt |
208 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
10559043 |
atcattattgatgttgcttctgcattacattatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgt |
10559131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 7193169 - 7193257
Alignment:
| Q |
143 |
attacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttg |
231 |
Q |
| |
|
||||||||| || |||| ||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| | ||||||||||||| |
|
|
| T |
7193169 |
attacattaccttcatcttgaatgtgagcaatcgatcattcattgtgatctaaagccaagcaatgtccttcttgacgatgacatggttg |
7193257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 10652257 - 10652159
Alignment:
| Q |
133 |
ttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttg |
231 |
Q |
| |
|
||||||||| ||||||||| || ||||| |||||||||||| | | ||||||||||||||||||||||| ||||| ||||| |||| |||||||||| |
|
|
| T |
10652257 |
ttgcttctgtattacattaccttcatcatgaatgtgagcaagcggtcattcattgtgatctaaagccaagtaatgtccttcttgatgacgacatggttg |
10652159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 9836511 - 9836285
Alignment:
| Q |
1 |
atttaaagctctagtgttttattacatgaaaaatggaagctagcttagaacaatggttgcatcctgagattttaaattcagagcatccaaaaacattgga |
100 |
Q |
| |
|
|||||||||| |||| ||| ||||||||||||||||||||| ||||||||||| | |||| || | |||||||| |||| | ||||||| | |
|
|
| T |
9836511 |
atttaaagctttagtttttgattacatgaaaaatggaagct----tagaacaatggctttatccctggacagtggattcagagtatcctagaacattgaa |
9836416 |
T |
|
| Q |
101 |
ccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagcca |
200 |
Q |
| |
|
||||| ||| || |||| ||| || ||| |||||||||||||||||||||| ||| |||||||||||| || | |||||||||||| | |||||| |
|
|
| T |
9836415 |
ccttgttcaaagactaaatatctccattgatattgcttctgcattacattatcttcattgtgaatgtgagcaagtggtcattcattgtgatatcaagcca |
9836316 |
T |
|
| Q |
201 |
agcaatgttcttctgaatgatgacatggttg |
231 |
Q |
| |
|
||||| | ||||| ||||| ||||||||| |
|
|
| T |
9836315 |
agcaacatccttctcgatgataacatggttg |
9836285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 231
Target Start/End: Complemental strand, 10660130 - 10660042
Alignment:
| Q |
143 |
attacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttg |
231 |
Q |
| |
|
||||||||| || ||||| |||||||||||| | | ||||||||||||||||||||||| ||||| ||||| | ||||||||||||| |
|
|
| T |
10660130 |
attacattaccttcatcacgaatgtgagcaagcggtcattcattgtgatctaaagccaagtaatgtccttcttgacgatgacatggttg |
10660042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 7319 - 7545
Alignment:
| Q |
1 |
atttaaagctctagtgttttattacatgaaaaatggaagctagcttagaacaatggttgcatcctgagattttaaattcagagcatccaaaaacattgga |
100 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||||||||||| ||||||| ||||| |||||||||| ||| ||| || | | ||||| ||||||| | |
|
|
| T |
7319 |
atttaaagctctagtttttgaatacatgaaaaatggaagct----tagaacagtggttacatcctgagactttgaatgcaaatcctccaataacattgaa |
7414 |
T |
|
| Q |
101 |
ccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagcca |
200 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||||||| || |||| ||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
7415 |
ccttggtcatagattaaacatcatcatcgatgttgcttctgcattacattaacttcatcgagaatgtgagcaattaatacttcattgtgatctaaagcca |
7514 |
T |
|
| Q |
201 |
agcaatgttcttctgaatgatgacatggttg |
231 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| |
|
|
| T |
7515 |
agcaatgtccttcttgatgatgacatggttg |
7545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 6e-58; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 12899596 - 12899822
Alignment:
| Q |
1 |
atttaaagctctagtgttttattacatgaaaaatggaagctagcttagaacaatggttgcatcctgagattttaaattcagagcatccaaaaacattgga |
100 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||||||||||| ||||||||||||| ||||| |||| ||| ||| || | | ||||| ||||||| | |
|
|
| T |
12899596 |
atttaaagctctagtttttgaatacatgaaaaatggaagct----tagaacaatggttacatcccgagactttgaatgcaaatcctccaacaacattgaa |
12899691 |
T |
|
| Q |
101 |
ccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagcca |
200 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||||||||| |||||||| |
|
|
| T |
12899692 |
ccttggtcatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagcaattagtctttcattgtgatataaagcca |
12899791 |
T |
|
| Q |
201 |
agcaatgttcttctgaatgatgacatggttg |
231 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| |
|
|
| T |
12899792 |
agcaatgtccttcttgatgatgacatggttg |
12899822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 12948670 - 12948896
Alignment:
| Q |
1 |
atttaaagctctagtgttttattacatgaaaaatggaagctagcttagaacaatggttgcatcctgagattttaaattcagagcatccaaaaacattgga |
100 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||||||||||| ||||||| ||||| |||||||||| ||| ||| || | | ||||| ||||||| | |
|
|
| T |
12948670 |
atttaaagctctagtttttgaatacatgaaaaatggaagct----tagaacagtggttacatcctgagactttgaatgcaaatcctccaacaacattgaa |
12948765 |
T |
|
| Q |
101 |
ccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagcca |
200 |
Q |
| |
|
|||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||| | |||||||||||||||| ||| |
|
|
| T |
12948766 |
ccttcgtcgtagattaaacatcattatcgatgttgcttctgcattacattatcttcatcgataatgtgagcaattagtccttcattgtgatctaaaacca |
12948865 |
T |
|
| Q |
201 |
agcaatgttcttctgaatgatgacatggttg |
231 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| |
|
|
| T |
12948866 |
agcaatgtccttcttgatgatgacatggttg |
12948896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 12907216 - 12907442
Alignment:
| Q |
1 |
atttaaagctctagtgttttattacatgaaaaatggaagctagcttagaacaatggttgcatcctgagattttaaattcagagcatccaaaaacattgga |
100 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||||||||||| ||||||| ||||| |||||||| | ||| ||| || | | ||||| ||||||| | |
|
|
| T |
12907216 |
atttaaagctctagtttttgaatacatgaaaaatggaagct----tagaacagtggttacatcctgaaactttgaatgcaaatcctccaacaacattgaa |
12907311 |
T |
|
| Q |
101 |
ccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagcca |
200 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| || || | |||||||||||||| ||| |
|
|
| T |
12907312 |
ccttggtcttagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagcagttaatcctccattgtgatctaaaacca |
12907411 |
T |
|
| Q |
201 |
agcaatgttcttctgaatgatgacatggttg |
231 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| |
|
|
| T |
12907412 |
agcaatgtccttcttgatgatgacatggttg |
12907442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 12932305 - 12932531
Alignment:
| Q |
1 |
atttaaagctctagtgttttattacatgaaaaatggaagctagcttagaacaatggttgcatcctgagattttaaattcagagcatccaaaaacattgga |
100 |
Q |
| |
|
||||||||| ||||| ||| | ||||||||||||||||||| ||||||| ||||| |||||||||| ||| ||| || | | ||||| ||||||| | |
|
|
| T |
12932305 |
atttaaagcactagtttttgaatacatgaaaaatggaagct----tagaacagtggttacatcctgagactttgaatgcaaatcctccaacaacattgaa |
12932400 |
T |
|
| Q |
101 |
ccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagcca |
200 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||| ||||| || |||| |||||||||||| || || |||||||||||||||| ||| |
|
|
| T |
12932401 |
ccttggtcatagattaaacatcatcatcgatgttgcttctgcattgcattaccttcatcgagaatgtgagcagttaatccttcattgtgatctaaaacca |
12932500 |
T |
|
| Q |
201 |
agcaatgttcttctgaatgatgacatggttg |
231 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| |
|
|
| T |
12932501 |
agcaatgtccttcttgatgatgacatggttg |
12932531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 12958104 - 12958330
Alignment:
| Q |
1 |
atttaaagctctagtgttttattacatgaaaaatggaagctagcttagaacaatggttgcatcctgagattttaaattcagag-catccaaaaacattgg |
99 |
Q |
| |
|
||||||||||||||| ||| | |||||| |||||||||||| ||||||| ||||| |||||| | ||||| ||| | ||| | ||||| ||||||| |
|
|
| T |
12958104 |
atttaaagctctagtttttgaatacatggaaaatggaagct----tagaacagtggttacatcctcaaattttgaatgc-gagtcctccaacaacattga |
12958198 |
T |
|
| Q |
100 |
accttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagcc |
199 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| || || |||| |||||||||||||| |
|
|
| T |
12958199 |
accttggtcatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagcagttaatccttcactgtgatctaaagcc |
12958298 |
T |
|
| Q |
200 |
aagcaatgttcttctgaatgatgacatggttg |
231 |
Q |
| |
|
||||||||| ||||| ||| ||||||||||| |
|
|
| T |
12958299 |
aagcaatgtccttcttgatggtgacatggttg |
12958330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 17923586 - 17923360
Alignment:
| Q |
1 |
atttaaagctctagtgttttattacatgaaaaatggaagctagcttagaacaatggttgcatcctgagattttaaattcagagcatccaaaaacattgga |
100 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||||||||||| ||||||| ||||| |||||||||| ||| ||| || | | ||||| ||||||| | |
|
|
| T |
17923586 |
atttaaagctctagtttttgaatacatgaaaaatggaagct----tagaacagtggttacatcctgagactttgaatgcaaatcctccaacaacattgaa |
17923491 |
T |
|
| Q |
101 |
ccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagcca |
200 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||| ||||| || |||| |||||||||||| || || |||||||||||||||| ||| |
|
|
| T |
17923490 |
ccttggtcatagattaaacatcatcatcgatgttgcttctgcattgcattaccttcatcgagaatgtgagcagttaatccttcattgtgatctaaaacca |
17923391 |
T |
|
| Q |
201 |
agcaatgttcttctgaatgatgacatggttg |
231 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| |
|
|
| T |
17923390 |
agcaatgtccttcttgatgatgacatggttg |
17923360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 31467239 - 31467136
Alignment:
| Q |
111 |
aggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttc |
210 |
Q |
| |
|
|||||||| || ||||| || |||||||| ||||| |||||||| ||||| |||||| ||||| | |||||||||||| ||||||| ||||| |||| |
|
|
| T |
31467239 |
aggttaaatattattattgacgttgcttcggcatttcattatcttcatcatgaatgtcagcaacctgtcattcattgtgatttaaagcctagcaacgttc |
31467140 |
T |
|
| Q |
211 |
ttct |
214 |
Q |
| |
|
|||| |
|
|
| T |
31467139 |
ttct |
31467136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 28605824 - 28605875
Alignment:
| Q |
180 |
attcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttg |
231 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||| || |||||||||||| |
|
|
| T |
28605824 |
attcattgtgatttaaagccaagcaatattcttcttcataatgacatggttg |
28605875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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