View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14424_low_27 (Length: 247)
Name: NF14424_low_27
Description: NF14424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14424_low_27 |
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| [»] scaffold0848 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 7380110 - 7380348
Alignment:
| Q |
14 |
atattgtaagcaagcatttatccaatgcttctt---aaatttgaagaactatatgccaattttatagaatgcgtgcg-tatcata--atatttatgttaa |
107 |
Q |
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| T |
7380110 |
atattgtaagcaagcatttatccaatgcttcttcttaaatttgaagaactttatgccaattttatagaatgcgtattatatcatatcatatttatgttaa |
7380209 |
T |
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| Q |
108 |
ttgcttatagttagcgaaagttcat-------------tatatatacacacacacgattctatgcttgtacataagtatcttagatttgaatgatagaat |
194 |
Q |
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| T |
7380210 |
ttgcttatagttagcgaaagttaatatatatatatatatatatacacacacacacgattctatgcttgtacataagtatcttagatttgaatgatagaat |
7380309 |
T |
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| Q |
195 |
tcaagtggtcatgcctg-aagttatgatcttaactctct |
232 |
Q |
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| T |
7380310 |
tcaagtggtcatgcctgaaagttatgatcttaactctct |
7380348 |
T |
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Target: scaffold0848 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0848
Description:
Target: scaffold0848; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 3287 - 3328
Alignment:
| Q |
14 |
atattgtaagcaagcatttatccaatgcttcttaaatttgaa |
55 |
Q |
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| T |
3287 |
atattgtaagcaagcatttatccaatgcctcttaaatttgaa |
3328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 47392596 - 47392555
Alignment:
| Q |
14 |
atattgtaagcaagcatttatccaatgcttcttaaatttgaa |
55 |
Q |
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| T |
47392596 |
atattgtaagcaagcatttatccaatgcctcttaaatttgaa |
47392555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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