View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14424_low_28 (Length: 238)
Name: NF14424_low_28
Description: NF14424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14424_low_28 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 7608339 - 7608561
Alignment:
| Q |
16 |
acttcgttgtgtaatagatgccaagaagtg-gctactgcaat-ttcctttgtattggagtgtgnnnnnnnnnnacgaaaaaagtttaagtgaattgggtt |
113 |
Q |
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| T |
7608339 |
acttcgttgtgtaatagatgccaagaagtgagctactgcaatgttcctttgtattggagtgtgttttttgtttacgaaaaaagtttaagtgaattggatt |
7608438 |
T |
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| Q |
114 |
tcgaaagctcatttagggttagggcaaagtgacaaacctcaatgtgtatattggagtatatttgagggtgagccaacttcttattaaataagtcaacttt |
213 |
Q |
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| T |
7608439 |
tcggaagctcatttagggttagggtaaagtgacaaacctcaatgt--atattggagtatgttttagggtgagtcaacttcttattaaataagtcaacttt |
7608536 |
T |
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| Q |
214 |
cattgttgagtcctaagagttcgcc |
238 |
Q |
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| T |
7608537 |
cattgttgagtcctaagagttcgcc |
7608561 |
T |
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