View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14424_low_3 (Length: 621)
Name: NF14424_low_3
Description: NF14424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14424_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 604
Target Start/End: Original strand, 2094425 - 2095021
Alignment:
| Q |
1 |
gtaatgagcagaattcaaaaaattgtacgttatatatgagagtgaaaaagttaagaacttgttaaataggtgatcatatcattcctaatcaaatttgttt |
100 |
Q |
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| T |
2094425 |
gtaatgagcagaattcaaaaaattgtacgttat----gagagtgaaaaagttaagaacttgttaaataggtgatcatatcattcctaatcaaatttgttt |
2094520 |
T |
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| Q |
101 |
tgtcaaatcttcacgtgtttt--ctgttatttttcaaagtgtcgtcgagtatcatttcagatattgaatgtcnnnnnnnnnaagataaaataaaaagtag |
198 |
Q |
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||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2094521 |
tgtaaaatcttcatgtgttttttctgttatttttcaaagtgtcgtcgagtatcatttcagatattgaatgtctttttttg-aagataaaataaaaagtag |
2094619 |
T |
|
| Q |
199 |
atgcgagtgaagagacagggaaaattcattaggtaaaatgcgataaaatttgtagaaggaggaaggatggagggttagacattaggaacatcaaagcttt |
298 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2094620 |
atgcgagtggagagacagggaaaattcattaggtaaaatgcgataaaatttgtagaaggaggaaggatggagggttagacattaggaacatcaaagcttt |
2094719 |
T |
|
| Q |
299 |
taattttgctttactaagcaaatatggttgtggaggatgaaaatagatcaatagtgggttatgggtgagagtccttcaagacaaatatggggttacttgg |
398 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
2094720 |
taattttgctttactatgcaaatatggttgtggaggatgaaaatagatcaatagtgggttatgggtgagagtccttcaagacaaatatggggatactt-g |
2094818 |
T |
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| Q |
399 |
ggagatatttggagtttaaataaagggttagtggatcattccttaaattggttttcattagtttaaggatgaaggtgggattggtagggacacnnnnnnn |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2094819 |
ggagatatttggagtttaaataaagggttagtggatcattccttaaattggttttcattagtttaaggatgaaggtggggatggtagggacac---tttt |
2094915 |
T |
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| Q |
499 |
nnnngaaaggagccttggttaaacgggttaacgttgagagaaagatttaacatactttattgaatagcatacaggaaaaatacaataacgttgatgatgc |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2094916 |
ttttgaaaggagccttggttaaacgggttaacgttgagagaaagatttaacatactttattgaatagcataccggaaaaatacaataacgttgatgatgc |
2095015 |
T |
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