View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14424_low_30 (Length: 207)
Name: NF14424_low_30
Description: NF14424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14424_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 9756171 - 9755986
Alignment:
| Q |
20 |
gaagggggtgatgaaggagcatcaacagatggtggtgtggaaggagttgttgaaggtggtagtgttgtaggatcaaccacaactggtggtgtcgaaggag |
119 |
Q |
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| T |
9756171 |
gaagggggtgatgaaggagcatcaacagatggtggtgtggaatgagttgttgaaggtggtagtgttgtaggatcaatcacaacttgtggtgtcgaaggag |
9756072 |
T |
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| Q |
120 |
ccattgtggttggtggtgtggaaggaggtgttgaaggcggtggtgttgatggagcatgaacaagtggtggtgtggaaggagcgacc |
205 |
Q |
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| T |
9756071 |
ctatcgcggttggtggcgtggaaggaggtgttgaaggcggtggtgttgatggagcatgaacaagtggtggtgtggaaggagcgacc |
9755986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 9756291 - 9756155
Alignment:
| Q |
20 |
gaagggggtgatgaaggagcatcaacagatggtggtgtggaaggagttgttgaaggtggtagtgttgtaggatcaaccacaactggtggtgtcgaaggag |
119 |
Q |
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| T |
9756291 |
gaagggggtgttgaaggatcatgaacgggtggtggtgttgaaggaggtgttgaaggtggtggtgtcgtaggatcaaccaaagatggtggtgtcgaaggag |
9756192 |
T |
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| Q |
120 |
ccattgtggttggtggtgtggaaggaggtgttgaagg |
156 |
Q |
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| T |
9756191 |
ctaccgtagttggtggtgtagaagggggtgatgaagg |
9756155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 50 - 156
Target Start/End: Complemental strand, 9755910 - 9755804
Alignment:
| Q |
50 |
ggtggtgtggaaggagttgttgaaggtggtagtgttgtaggatcaaccacaactggtggtgtcgaaggagccattgtggttggtggtgtggaaggaggtg |
149 |
Q |
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| T |
9755910 |
ggtggtgtggatggaggtgttgaaggtggtagtgtcgttggatcaaccgcaactggtgatgtcgaaggagctaccgtaattggtggtgtggaagggggtg |
9755811 |
T |
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| Q |
150 |
ttgaagg |
156 |
Q |
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||||||| |
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| T |
9755810 |
ttgaagg |
9755804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 9756382 - 9756275
Alignment:
| Q |
49 |
tggtggtgtggaaggagttgttgaaggtggtagtgttgtaggatcaaccacaactggtggtgtcgaaggagccattgtggttggtggtgtggaaggaggt |
148 |
Q |
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| T |
9756382 |
tggtggtgtggtaggaggtgttgaaggtggtggtatcgtaggattaaccacggatggtggtgtcgaaggagctaccgcaattggtggtgtggaagggggt |
9756283 |
T |
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| Q |
149 |
gttgaagg |
156 |
Q |
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| T |
9756282 |
gttgaagg |
9756275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 9781453 - 9781346
Alignment:
| Q |
49 |
tggtggtgtggaaggagttgttgaaggtggtagtgttgtaggatcaaccacaactggtggtgtcgaaggagccattgtggttggtggtgtggaaggaggt |
148 |
Q |
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||||||||||||||||| ||| ||||||||| |||| ||||||||||||| |||| |||||||||||| | | |||||||||||||||| ||| |
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| T |
9781453 |
tggtggtgtggaaggaggtgtcgaaggtggtggtgtgaaaggatcaaccacaggtggttgtgtcgaaggagataccataattggtggtgtggaagggggt |
9781354 |
T |
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| Q |
149 |
gttgaagg |
156 |
Q |
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| T |
9781353 |
gttgaagg |
9781346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 71 - 165
Target Start/End: Complemental strand, 9783403 - 9783309
Alignment:
| Q |
71 |
gaaggtggtagtgttgtaggatcaaccacaactggtggtgtcgaaggagccattgtggttggtggtgtggaaggaggtgttgaaggcggtggtgt |
165 |
Q |
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||||| ||| |||| | ||||||||||||| |||||||||||||||||| | | |||||||| |||||||||||||| |||| |||||||| |
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| T |
9783403 |
gaaggaggtcgtgtggaaggatcaaccacaggtggtggtgtcgaaggagcaaccatagttggtggggtggaaggaggtgtcgaagttggtggtgt |
9783309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 207
Target Start/End: Complemental strand, 9783361 - 9783186
Alignment:
| Q |
32 |
gaaggagcatcaacagatggtggtgtggaaggagttgttgaaggtggtagtgttgtaggatcaaccacaactggtggtgtcgaaggagccattgtggttg |
131 |
Q |
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||||||||| | | || |||||| |||||||||| ||| |||| |||| |||| | ||||||||||| |||| |||||| |||||| | | |||| |
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| T |
9783361 |
gaaggagcaaccatagttggtggggtggaaggaggtgtcgaagttggtggtgtggaaggatcaaccatgggtggttgtgtcgtaggagcaaccatagttg |
9783262 |
T |
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| Q |
132 |
gtggtgtggaaggaggtgttgaaggcggtggtgttgatggagcatgaacaagtggtggtgtggaaggagcgaccat |
207 |
Q |
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| T |
9783261 |
gtggtgtggaaaggggtgttgaagatggtggtgtggaaggatcaaccacgggtggtggtgttgaaggagctaccat |
9783186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 9781455 - 9781418
Alignment:
| Q |
128 |
gttggtggtgtggaaggaggtgttgaaggcggtggtgt |
165 |
Q |
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||||||||||||||||||||||| ||||| |||||||| |
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| T |
9781455 |
gttggtggtgtggaaggaggtgtcgaaggtggtggtgt |
9781418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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