View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14424_low_4 (Length: 580)

Name: NF14424_low_4
Description: NF14424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14424_low_4
NF14424_low_4
[»] chr6 (1 HSPs)
chr6 (7-562)||(35200437-35200988)
[»] chr4 (5 HSPs)
chr4 (252-307)||(37918638-37918693)
chr4 (252-307)||(33833086-33833141)
chr4 (256-307)||(37075293-37075344)
chr4 (252-307)||(50960977-50961032)
chr4 (255-307)||(27472503-27472555)
[»] chr7 (2 HSPs)
chr7 (256-307)||(45184200-45184251)
chr7 (256-307)||(6999012-6999063)
[»] chr8 (1 HSPs)
chr8 (252-307)||(36999142-36999197)
[»] chr3 (1 HSPs)
chr3 (256-300)||(36499026-36499070)


Alignment Details
Target: chr6 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 7 - 562
Target Start/End: Complemental strand, 35200988 - 35200437
Alignment:
Q  7 agaagcaaaggcataatggacaggagacgcgctgataactcaaaaagttataaataagacatggattaaaggttctatatgttgacactcataagtaata 106  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35200988 agaaacaaaagcataatggacaggagacgcgctgataactcaaaaagttataaataagacatggattaaaggttctatatgttgacactcataagtaata 35200889  T
Q  107 caaaagtggccaactttagatcactacgtaactgtgaggtactgtgattatacaaatatatgctaaatatatatatgaataggtagtgcctgaaaaagag 206  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  35200888 caaaagcggccaactttagatcactacgtaactgtgaggtactgtgattatacaaatatatgctaaatat--atatgaataggtagtgcctgaaaaagag 35200791  T
Q  207 taaaatctgttgtagaccctgatataattagtgatgcgaaggaagggtgtatcatcaaagaaagtaacatttgctgagacataaaaacgatgtgtagatg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  35200790 taaaatctgttgtagaccctgatataattagtgatgcgaaggaagggtgtatcatcaaagaaagtaacatttgctgagacataaaaacgatgtgtaga-- 35200693  T
Q  307 gtggagcataagatcaatatcccatttgaactctagaatacccaagaaattcacacttagcagctcgagcagacaatatatcacaaccacggaattgaaa 406  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35200692 -tggagcataagatcaatatcccatttgaactctagaatacccaagaaattcacacttagcagctcgagcagacaatatatcacaaccacggaattgaaa 35200594  T
Q  407 gtggcgaaacttgtggtgcatcaagtgccacgaggaacaacgagacac-ggtgcattcagtaagtgtcatattggattaagggattcaattcaactaggt 505  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35200593 gtggcgaaacttgtggtgtatcaagtgccacgaggaacaacgagacactggtgcattcagtaagtgtcatattggattaagggattcaattcaactaggt 35200494  T
Q  506 ctttgtatgaagaatagtttattggatggaactttatgatatgatagcctagatagt 562  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35200493 ctttgtatgaagaatagtttattggatggaactttatgatatgatagcctagatagt 35200437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 37918638 - 37918693
Alignment:
Q  252 ggtgtatcatcaaagaaagtaacatttgctgagacataaaaacgatgtgtagatgg 307  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||    
T  37918638 ggtgtatcctcaaagaaagtaacatctgcagagacataaaaacgatgtgtagatgg 37918693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 33833141 - 33833086
Alignment:
Q  252 ggtgtatcatcaaagaaagtaacatttgctgagacataaaaacgatgtgtagatgg 307  Q
    |||||||  |||| ||||||||||| ||| ||||||||||||||||||||||||||    
T  33833141 ggtgtattctcaaggaaagtaacatctgcagagacataaaaacgatgtgtagatgg 33833086  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 256 - 307
Target Start/End: Complemental strand, 37075344 - 37075293
Alignment:
Q  256 tatcatcaaagaaagtaacatttgctgagacataaaaacgatgtgtagatgg 307  Q
    |||| |||||||||||||||| |||||| |||||||||||||||| ||||||    
T  37075344 tatcctcaaagaaagtaacatatgctgaaacataaaaacgatgtgcagatgg 37075293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 50961032 - 50960977
Alignment:
Q  252 ggtgtatcatcaaagaaagtaacatttgctgagacataaaaacgatgtgtagatgg 307  Q
    |||||||| || |||||||||||||||||||| | |||||| ||||||||||||||    
T  50961032 ggtgtatcctcgaagaaagtaacatttgctgaaatataaaaccgatgtgtagatgg 50960977  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 27472503 - 27472555
Alignment:
Q  255 gtatcatcaaagaaagtaacatttgctgagacataaaaacgatgtgtagatgg 307  Q
    ||||| |||||||||||||||| ||| |||| ||||||| |||||||||||||    
T  27472503 gtatcctcaaagaaagtaacatgtgcagagatataaaaaggatgtgtagatgg 27472555  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 307
Target Start/End: Original strand, 45184200 - 45184251
Alignment:
Q  256 tatcatcaaagaaagtaacatttgctgagacataaaaacgatgtgtagatgg 307  Q
    |||| ||||||||||||||||||||||| |||||||||||||||| ||||||    
T  45184200 tatcctcaaagaaagtaacatttgctgaaacataaaaacgatgtgcagatgg 45184251  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 307
Target Start/End: Complemental strand, 6999063 - 6999012
Alignment:
Q  256 tatcatcaaagaaagtaacatttgctgagacataaaaacgatgtgtagatgg 307  Q
    |||| |||||||||||||||| |||||| | |||||| ||||||||||||||    
T  6999063 tatcctcaaagaaagtaacatctgctgaaatataaaagcgatgtgtagatgg 6999012  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 36999197 - 36999142
Alignment:
Q  252 ggtgtatcatcaaagaaagtaacatttgctgagacataaaaacgatgtgtagatgg 307  Q
    |||||||| |||||||||||||||| |||  | |||||||||||||||||||||||    
T  36999197 ggtgtatcctcaaagaaagtaacatctgcataaacataaaaacgatgtgtagatgg 36999142  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 36499070 - 36499026
Alignment:
Q  256 tatcatcaaagaaagtaacatttgctgagacataaaaacgatgtg 300  Q
    |||| |||||||||||||| | |||||| ||||||||||||||||    
T  36499070 tatcctcaaagaaagtaacgtctgctgaaacataaaaacgatgtg 36499026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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