View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14424_low_8 (Length: 490)
Name: NF14424_low_8
Description: NF14424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14424_low_8 |
 | |
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| [»] scaffold0179 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 50386138 - 50385663
Alignment:
| Q |
1 |
ccaccaaaataagtgaaacgacagcaccaaaaaatgttgcagctgtaataataatgaaagataacttgtaacaatcaacaccaacacaattcaattcctg |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50386138 |
ccaccaaaataagtgaaacaacagcaccaaaaaatgttgcagctgtgataataatgaaagataacttgtaacaatcaacaccaacacaattcaattcctg |
50386039 |
T |
|
| Q |
101 |
cccttctattctttgctttccaagtgcttccaattgcttctttgcttctttgtcatacaaatgaccagcgatcttcacattaagcacatataatccaagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50386038 |
cccttctattctttgctttccaagtgcttccaattgcttctttgcttctttgtcatacaaatgaccagcgatcttcacattaagcacatataatccaagg |
50385939 |
T |
|
| Q |
201 |
ggacttgctacacttccaaaattatacaaagttgcataatatttaagtccaaaaagttctgatataatggcaaaaagtaatggccattgagcaccaaaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50385938 |
ggacttgctacacttccaaaattatacaaagttgcataatatttaagtccaaaaagttctgatataatggcaaaaagtaatggccattgagcaccaaaac |
50385839 |
T |
|
| Q |
301 |
aaaatccaataatcactgaagctacataaagaccctctggcacatcaaatgctatcaaaaggtgtcccacacaagagacaaagagagtcatagtaagcat |
400 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| || | ||||||||| |
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|
| T |
50385838 |
aaaatccaataatcactgaagctacgtagagaccctctggcacatcaaatgctatcagaaggtgtccaacacatgagacaaagagtgttaaagtaagcat |
50385739 |
T |
|
| Q |
401 |
aagaggacgaggaaatctgtactttgttagaaaatgttcagaaacaaatcctgagaaaacacgtcctagataattc |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50385738 |
aagaggacgaggaaatctgtactttgttagaaaatgttcagaaacaaatcctgagaaaacacgtcctagataattc |
50385663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 2 - 476
Target Start/End: Complemental strand, 50394556 - 50394082
Alignment:
| Q |
2 |
caccaaaataagtgaaacgacagcaccaaaaaatgttgcagctgtaataataatgaaagataacttgtaacaatcaacaccaacacaattcaattcctgc |
101 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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|
| T |
50394556 |
caccaaaataagtgaaacaacagcaccaaaaaatgttgcagctgtaataataatgaaagataacttgaaacaatcaacaccaacacaattcaattcatgc |
50394457 |
T |
|
| Q |
102 |
ccttctattctttgctttccaagtgcttccaattgcttctttgcttctttgtcatacaaatgaccagcgatcttcacattaagcacatataatccaagtg |
201 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
50394456 |
ccttctattctatgctttccaagtgcttccaattgtttcttagcctctttgtcatacaaatgaccagtgatcttcacattaagcacatataatccaagtg |
50394357 |
T |
|
| Q |
202 |
gacttgctacacttccaaaattatacaaagttgcataatatttaagtccaaaaagttctgatataatggcaaaaagtaatggccattgagcaccaaaaca |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50394356 |
gacttgctacacttccaaaattatacaaagttgcataatatttaagtccaaaaagttctgatataatggcaaaaagtaatggccattgagcaccaaaaca |
50394257 |
T |
|
| Q |
302 |
aaatccaataatcactgaagctacataaagaccctctggcacatcaaatgctatcaaaaggtgtcccacacaagagacaaagagagtcatagtaagcata |
401 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| || | |||||||||| |
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|
| T |
50394256 |
aaatccaataatcactgaagctacgtagagaccctctggcacatcaaatgctatcagaaggtgtccaacacatgagacaaagagtgttaaagtaagcata |
50394157 |
T |
|
| Q |
402 |
agaggacgaggaaatctgtactttgttagaaaatgttcagaaacaaatcctgagaaaacacgtcctagataattc |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50394156 |
agaggacgaggaaatctgtactttgttagaaaatgttcagaaacaaatcctgagaaaacacgtcctagataattc |
50394082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 3 - 476
Target Start/End: Complemental strand, 50391281 - 50390808
Alignment:
| Q |
3 |
accaaaataagtgaaacgacagcaccaaaaaatgttgcagctgtaataataatgaaagataacttgtaacaatcaacaccaacacaattcaattcctgcc |
102 |
Q |
| |
|
||||||||||| ||| ||||||||||| || |||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
50391281 |
accaaaataaggttaacaacagcaccaaagaaagttgcagctgcaataataatgaaagataacttgaaacaatcaacgccaacacaattcaattcctgcc |
50391182 |
T |
|
| Q |
103 |
cttctattctttgctttccaagtgcttccaattgcttctttgcttctttgtcatacaaatgaccagcgatcttcacattaagcacatataatccaagtgg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||| |||||||||||||||||| |||| ||| |
|
|
| T |
50391181 |
cttctattctttgctttccaagtgcttccaattgtttctcagcttctttgtcatacaaatgaccagtgatcgccacattaagcacatataagccaattgg |
50391082 |
T |
|
| Q |
203 |
acttgctacacttccaaaattatacaaagttgcataatatttaagtccaaaaagttctgatataatggcaaaaagtaatggccattgagcaccaaaacaa |
302 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50391081 |
acttgttatacttccaaaattatacaaagttgcataatatttaagtccaaagagttctgatataatggcaaaaagtaacggccattgagcaccaaaacaa |
50390982 |
T |
|
| Q |
303 |
aatccaataatcactgaagctacataaagaccctctggcacatcaaatgctatcaaaaggtgtcccacacaagagacaaagagagtcatagtaagcataa |
402 |
Q |
| |
|
||||| ||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
50390981 |
aatccgataataactgaagctacatagagaccctgtggcacatcaaatgctatcaaaaggtgtcccacacaagagacaaagagagtcaaagaaagcataa |
50390882 |
T |
|
| Q |
403 |
gaggacgaggaaatctgtactttgttagaaaatgttcagaaacaaatcctgagaaaacacgtcctagataattc |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50390881 |
gaggacgaggaaatctgtactttgttagaaaatgttcagaaacaaatcctgagaaaacacgtcctagataattc |
50390808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 131 - 476
Target Start/End: Complemental strand, 50408037 - 50407692
Alignment:
| Q |
131 |
caattgcttctttgcttctttgtcatacaaatgaccagcgatcttcacattaagcacatataatccaagtggacttgctacacttccaaaattatacaaa |
230 |
Q |
| |
|
||||||| |||| |||||||||||||| ||||||||||||| | | |||||||| | ||||||||||| |||||| ||||| | ||||| || |||| |
|
|
| T |
50408037 |
caattgcctcttagcttctttgtcatataaatgaccagcgaccctaacattaagaaaatataatccaattggactagctaccccaccaaagttcatcaaa |
50407938 |
T |
|
| Q |
231 |
gttgcataatatttaagtccaaaaagttctgatataatggcaaaaagtaatggccattgagcaccaaaacaaaatccaataatcactgaagctacataaa |
330 |
Q |
| |
|
|||| ||||||||| | ||||| | || || || |||||||||| ||||||||||| |||||||||||||||||||| || |||||||| | ||| | |
|
|
| T |
50407937 |
gttgaataatatttcaacccaaacaactccgaaattatggcaaaaaccaatggccattgtgcaccaaaacaaaatccaatgattactgaagcaaaataga |
50407838 |
T |
|
| Q |
331 |
gaccctctggcacatcaaatgctatcaaaaggtgtcccacacaagagacaaagagagtcatagtaagcataagaggacgaggaaatctgtactttgttag |
430 |
Q |
| |
|
|| | | |||||||||| |||||||| | ||| || ||||| || | ||| | | ||| || | ||| || || || |||||| |||||||||||| |
|
|
| T |
50407837 |
tgccattttgcacatcaaaggctatcaataagtgaccgacacaggataaaaacataatcaatgtgaacatgagtggtcgtggaaatttgtactttgttaa |
50407738 |
T |
|
| Q |
431 |
aaaatgttcagaaacaaatcctgagaaaacacgtcctagataattc |
476 |
Q |
| |
|
|| ||||||||||||||| || || ||||| | ||||||||||||| |
|
|
| T |
50407737 |
aacatgttcagaaacaaaaccagaaaaaactcttcctagataattc |
50407692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 378
Target Start/End: Original strand, 19712643 - 19712805
Alignment:
| Q |
216 |
ccaaaattatacaaagttgcataatatttaagtccaaaaagttctgatataatggcaaaaagtaatggccattgagcaccaaaacaaaatccaataatca |
315 |
Q |
| |
|
|||| ||| ||||| |||| ||||||||||| ||||| ||||| ||||| || | ||| |||| |||||| | |||||||| || || |||||||| | |
|
|
| T |
19712643 |
ccaacattgtacaatgttgagtaatatttaagaccaaagagttcagatatgattgaaaatagtactggccaatttgcaccaaagcagaaaccaataataa |
19712742 |
T |
|
| Q |
316 |
ctgaagctacataaagaccctctggcacatcaaatgctatcaaaaggtgtcccacacaagaga |
378 |
Q |
| |
|
||| |||||||||||||| | ||| |||| |||||| || | |||||| || | |||||||| |
|
|
| T |
19712743 |
ttgatgctacataaagaccatttgggacattaaatgcaattagaaggtgacctaaacaagaga |
19712805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 53 - 193
Target Start/End: Complemental strand, 34297438 - 34297297
Alignment:
| Q |
53 |
aatgaaagataacttgtaacaatcaacaccaacacaattcaattcctgcccttctattctttgctt-tccaagtgcttccaattgcttctttgcttcttt |
151 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||| |||| || | ||| | || |||||||||||||||||| || || ||||| || |
|
|
| T |
34297438 |
aatgaaagataacttcaaacaatcaacaccaatacaattcaattcatgccttttttttcctacgttgtccaagtgcttccaattgattattagcttcctt |
34297339 |
T |
|
| Q |
152 |
gtcatacaaatgaccagcgatcttcacattaagcacatataa |
193 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
34297338 |
gtcatacaaatgaccagtgattgtaacattaagcacatataa |
34297297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 201 - 316
Target Start/End: Complemental strand, 41335065 - 41334950
Alignment:
| Q |
201 |
ggacttgctacacttccaaaattatacaaagttgcataatatttaagtccaaaaagttctgatataatggcaaaaagtaatggccattgagcaccaaaac |
300 |
Q |
| |
|
|||||||| ||| ||||||||| |||||||||| ||| ||||| | |||||||| ||| ||||| || ||||| | |||||||||||||| ||||||| |
|
|
| T |
41335065 |
ggacttgccacagctccaaaattgtacaaagttgaatagtatttcaatccaaaaatttcggatatgattgcaaacatcaatggccattgagctccaaaac |
41334966 |
T |
|
| Q |
301 |
aaaatccaataatcac |
316 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
41334965 |
aaaaaccaataatcac |
41334950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 3735 - 3641
Alignment:
| Q |
144 |
gcttctttgtcatacaaatgaccagcgatcttcacattaagcacatataatccaagtggacttgctacacttccaaaattatacaaagttgcata |
238 |
Q |
| |
|
|||||||||| |||| |||||| | |||||||||| | || ||| |||| ||||| || ||||||||||||||||| | |||||||||||||| |
|
|
| T |
3735 |
gcttctttgtgataccaatgactggtgatcttcacaatcagaacagataacacaagttgagttgctacacttccaaaactgtacaaagttgcata |
3641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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