View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14424_low_9 (Length: 485)
Name: NF14424_low_9
Description: NF14424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14424_low_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 49623869 - 49623401
Alignment:
| Q |
18 |
aatacacggctttggcgcatgtgtcctcatgctcatcagtcaagtttacgtaaacacgatcaccaaatgtctttgctgcagcagagatctcgtgtcaagt |
117 |
Q |
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| T |
49623869 |
aatacacggctttggcgcatgtgtcctcatgctcatcagtcaagtttacgtaaacacgatcaccaaatgtctttgcttcagcagagatctcgtgtcaagt |
49623770 |
T |
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| Q |
118 |
cgatccgccacttgtgcagcgttcttcttcattgtctcatggtaactttccaattatcatatttagtaaagagtagattgttcatggttaattaaagggg |
217 |
Q |
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| T |
49623769 |
cgatccgccacttgtgcagcgttcttcttcattgtctcatggtaactttccaattatcatatttagtaaagagtagattgttcatggttaattaaagggg |
49623670 |
T |
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| Q |
218 |
aaattaaaaatatggtattgtgatggttgacctagaccaaatatata--tataattgagatgaactttttggcttttagtttgagttcatatgttattgt |
315 |
Q |
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| T |
49623669 |
aaattaaaaatatggtattgtgatggttgacctagaccaaatatatatatataattgagatgaattttttggcttttagtttgagttcatatgttattgt |
49623570 |
T |
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| Q |
316 |
gttatcaggattgttttcttggcagcagaagcgtgcttgttggcagcatctgttatgaatgcaatccaaaattcgtatcttaatgagtattttttagggc |
415 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
49623569 |
gttatcaggattgttttcttggcagcagaagcatgcttgctggcagcatctgttatgaatgcaatccaaaatgcgtat-ttaatgagtattttttagggc |
49623471 |
T |
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| Q |
416 |
atgatttgtcttgcctcatactcagcaaaggtgtgtttgctgctggagctgccttgatcttgttttcaat |
485 |
Q |
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| T |
49623470 |
atgatttgtcttgcctcatactcagcaaaggtgtgtttgctgctggagctgccttgatcttgttttcaat |
49623401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 479
Target Start/End: Complemental strand, 49603168 - 49603129
Alignment:
| Q |
440 |
gcaaaggtgtgtttgctgctggagctgccttgatcttgtt |
479 |
Q |
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| T |
49603168 |
gcaaaggtgtgtttgctgctggggctgccttgaccttgtt |
49603129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 139 - 233
Target Start/End: Complemental strand, 14335678 - 14335588
Alignment:
| Q |
139 |
ttcttcttcattgtctcatggtaactttccaattatcatatttagtaaagagtagattgttcatggttaattaaaggggaaattaaaaatatggt |
233 |
Q |
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| T |
14335678 |
ttcttctacgttctctcatggtaactttccaattatca-at---gtaaagagtagattgctcatagttaattaaggaggaaattaaaaatgtggt |
14335588 |
T |
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