View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14425_high_1 (Length: 548)

Name: NF14425_high_1
Description: NF14425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14425_high_1
NF14425_high_1
[»] chr1 (11 HSPs)
chr1 (1-523)||(32885369-32885888)
chr1 (142-309)||(32896343-32896515)
chr1 (440-523)||(32935755-32935838)
chr1 (383-523)||(32896089-32896229)
chr1 (438-522)||(32953150-32953234)
chr1 (426-519)||(19503522-19503615)
chr1 (440-523)||(32919521-32919604)
chr1 (1-57)||(41753208-41753264)
chr1 (1-61)||(17875568-17875628)
chr1 (1-49)||(31867488-31867536)
chr1 (12-55)||(34459297-34459340)
[»] chr7 (4 HSPs)
chr7 (1-55)||(38826031-38826085)
chr7 (1-55)||(22937709-22937763)
chr7 (1-55)||(37966147-37966201)
chr7 (1-55)||(45197895-45197949)
[»] chr2 (4 HSPs)
chr2 (1-55)||(42755578-42755632)
chr2 (21-59)||(43780078-43780116)
chr2 (1-55)||(40653772-40653826)
chr2 (5-53)||(39368577-39368625)
[»] chr8 (3 HSPs)
chr8 (1-55)||(17839583-17839637)
chr8 (1-55)||(5637575-5637629)
chr8 (1-54)||(10014318-10014371)
[»] chr6 (7 HSPs)
chr6 (1-59)||(21148900-21148958)
chr6 (1-55)||(2753840-2753894)
chr6 (1-47)||(3051119-3051165)
chr6 (1-55)||(26218305-26218359)
chr6 (1-55)||(13647625-13647679)
chr6 (1-55)||(34385012-34385066)
chr6 (13-61)||(2836057-2836105)
[»] chr5 (4 HSPs)
chr5 (1-55)||(2985857-2985911)
chr5 (1-55)||(4306681-4306735)
chr5 (1-55)||(14317140-14317194)
chr5 (1-55)||(15497455-15497509)
[»] chr3 (5 HSPs)
chr3 (1-55)||(6891500-6891554)
chr3 (1-55)||(19269170-19269224)
chr3 (1-55)||(48757342-48757396)
chr3 (1-55)||(21434429-21434483)
chr3 (1-55)||(51817863-51817917)
[»] chr4 (10 HSPs)
chr4 (1-52)||(49908227-49908278)
chr4 (1-55)||(5516941-5516995)
chr4 (1-51)||(6211542-6211592)
chr4 (1-55)||(17555450-17555504)
chr4 (1-55)||(37236125-37236179)
chr4 (1-55)||(42843966-42844020)
chr4 (12-55)||(52373931-52373974)
chr4 (1-55)||(1818815-1818869)
chr4 (1-55)||(12679719-12679773)
chr4 (1-58)||(25182739-25182796)


Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Complemental strand, 32885888 - 32885369
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctctgccgccaccctactaaaccaaaattc-aagatgagatgttcaaa 99  Q
    ||||||||||||||| |||||||||||||  |||||||||||  ||||||| |||   ||||||  ||||| ||||| |||| |||||||||||||||||    
T  32885888 tcacatgtgaatttgcgataaatttttcgtccagactctata--attcctgactc---cgccactgtactagaccaagattctaagatgagatgttcaaa 32885794  T
Q  100 atacatacatactacaaatttgcatcgatggagttctattaattaatatcaaatcgagattcgactactatgtatcgtaagatactaataaccatgtaag 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32885793 atacatacatactacaaatttgcatcgatggagttctattaattaatatcaaatcgagattcgactactatgcatcgtaagatactaataaccatgtaag 32885694  T
Q  200 tggattgtctaaatggccacat-aggttataaaattctggtatagactaaatttttgtcttgtaaaactagtagctgaaaacaaactttgtgaagccttg 298  Q
    ||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32885693 tgatttgtctaaatggccacattaggttataaaattctggtatagactaaatttttgtcttgtaaaactagtagctgaaaacaaactttgtgaagccttg 32885594  T
Q  299 ttttacacaaaatcctcatgatgtgcaaattttattctaaatatttggatggacacctctactacatttccatctaaagttacatgctatattcaacatt 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32885593 ttttacacaaaatcctcatgatgtgcaaattttattctaaatatttggatggacacctctactacatttccatctaaaattacatgctatattcaacatt 32885494  T
Q  399 cttctaagcttccttctccatttttgtactgcaatttaactttggtcttgaaatcaacctctttgtcaccttctttcccccacagcaacagatacaaacc 498  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32885493 cttctaagcctccttctccatttttgtactgcaatttaactttggtcttgaaatcaacctctttgtcaccttctttcccccacagcaacagatacaaacc 32885394  T
Q  499 catgatcacaataaatgcacctatg 523  Q
    |||||||||||||||||||||||||    
T  32885393 catgatcacaataaatgcacctatg 32885369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 142 - 309
Target Start/End: Complemental strand, 32896515 - 32896343
Alignment:
Q  142 ttaatatcaaatcgagattcgactactatgtatcgtaagatactaataaccatgtaagt----ggatt-gtctaaatggccacataggttataaaattct 236  Q
    |||||| | ||||||||| |||||| ||||| || || |||||| |||||||||||| |    ||||| |||||||||||||| |||||| || ||||||    
T  32896515 ttaataactaatcgagatacgactaatatgtctcatacgatactgataaccatgtaatttaatggatttgtctaaatggccacctaggttgtataattct 32896416  T
Q  237 ggtatagactaaatttttgtcttgtaaaactagtagctgaaaacaaactttgtgaagccttgttttacacaaa 309  Q
    ||| ||||||||| ||||||||||||||||  |||||| |||||||||||| |||||||||||||||||||||    
T  32896415 ggtctagactaaacttttgtcttgtaaaacaggtagcttaaaacaaactttatgaagccttgttttacacaaa 32896343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 440 - 523
Target Start/End: Complemental strand, 32935838 - 32935755
Alignment:
Q  440 ttggtcttgaaatcaacctctttgtcaccttctttcccccacagcaacagatacaaacccatgatcacaataaatgcacctatg 523  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  32935838 ttggtcttcaaatcaatctctttgtcaccttctttcccccacagcaacaaatacaaacccatgatgacaataaatgcacctatg 32935755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 383 - 523
Target Start/End: Complemental strand, 32896229 - 32896089
Alignment:
Q  383 tgctatattcaacattcttctaagcttccttctccatttttgtactgcaatttaactttggtcttgaaatcaacctctttgtcaccttctttcccccaca 482  Q
    ||||||||||  |||||||||| |  ||| |||||| | |||||||||  ||||||||||||||||| |||||| ||||||||||||||||| |||||||    
T  32896229 tgctatattctgcattcttctacgtctccgtctccactattgtactgccttttaactttggtcttgatatcaacatctttgtcaccttctttaccccaca 32896130  T
Q  483 gcaacagatacaaacccatgatcacaataaatgcacctatg 523  Q
    |||||| ||| | ||||||||| ||||||||  ||||||||    
T  32896129 gcaacaaatatagacccatgatgacaataaaaccacctatg 32896089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 438 - 522
Target Start/End: Complemental strand, 32953234 - 32953150
Alignment:
Q  438 ctttggtcttgaaatcaacctctttgtcaccttctttcccccacagcaacagatacaaacccatgatcacaataaatgcacctat 522  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||    
T  32953234 ctttggtcttgaaatcgaccactttgtcaccttctttcccccacagcaacaaatacaaacccatgatgacgataaatgcacctat 32953150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 426 - 519
Target Start/End: Original strand, 19503522 - 19503615
Alignment:
Q  426 actgcaatttaactttggtcttgaaatcaacctctttgtcaccttctttcccccacagcaacagatacaaacccatgatcacaataaatgcacc 519  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||  || |  |||||||| ||||||| ||||||    
T  19503522 actgcaatttacctttggtcttgaaatcaacctctctgtcaccttctttcccccacagtaacaagtatagtcccatgatgacaataagtgcacc 19503615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 440 - 523
Target Start/End: Complemental strand, 32919604 - 32919521
Alignment:
Q  440 ttggtcttgaaatcaacctctttgtcaccttctttcccccacagcaacagatacaaacccatgatcacaataaatgcacctatg 523  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| | ||||| ||| ||||||||  ||||||||    
T  32919604 ttggtcttgaaatcaacatctttgtcaccttctttaccccacagcaacaaatatagacccacgatgacaataaaaccacctatg 32919521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 41753208 - 41753264
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctctg 57  Q
    |||||| |||||||||||||||||||| || || |||||||| ||||||||||||||    
T  41753208 tcacatatgaatttgtgataaattttttgcccaaactctatagaattcctggctctg 41753264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 17875568 - 17875628
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctctgccgc 61  Q
    ||||||||||||||| ||||||||||| || ||||||||||| ||||  |||||| |||||    
T  17875568 tcacatgtgaatttgcgataaattttttgcccagactctataaaatttatggctccgccgc 17875628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31867488 - 31867536
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcc 49  Q
    ||||||||||||||| |||||||||||||| ||| |||||| |||||||    
T  31867488 tcacatgtgaatttgcgataaatttttcgcccaggctctatgtaattcc 31867536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 34459297 - 34459340
Alignment:
Q  12 tttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    |||||||||||||||| || ||||||||||| ||||||||||||    
T  34459297 tttgtgataaattttttgcccagactctataaaattcctggctc 34459340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 38826085 - 38826031
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    ||||||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  38826085 tcacatgtgaatttgcgataaatttttcgcccagactctatgtaattcctggctc 38826031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 22937763 - 22937709
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    ||||||||||||||| |||||||||||||| ||| |||||| |||||||||||||    
T  22937763 tcacatgtgaatttgcgataaatttttcgctcaggctctatgtaattcctggctc 22937709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 37966201 - 37966147
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    ||||||||||||||| |||||||||||||   |||||| || |||||||||||||    
T  37966201 tcacatgtgaatttgcgataaatttttcgtctagactcaatgtaattcctggctc 37966147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 45197895 - 45197949
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    ||||||||||||||| ||||||||||| || || |||||||| |||| |||||||    
T  45197895 tcacatgtgaatttgcgataaattttttgcccacactctatagaatttctggctc 45197949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 42755632 - 42755578
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    ||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||    
T  42755632 tcacatgtgaatttgcgataaatttttcgcccaggctctatataattcctggctc 42755578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 43780078 - 43780116
Alignment:
Q  21 aatttttcgcacagactctatataattcctggctctgcc 59  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  43780078 aatttttcgcccagactctatataattcctggctctgcc 43780116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 40653826 - 40653772
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    ||||||||||||||  |||||||||||||| ||||  ||||||||||||| ||||    
T  40653826 tcacatgtgaatttacgataaatttttcgcccagagcctatataattcctagctc 40653772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 39368577 - 39368625
Alignment:
Q  5 atgtgaatttgtgataaatttttcgcacagactctatataattcctggc 53  Q
    ||||||||||  |||||||||||||| ||||||||||| ||||| ||||    
T  39368577 atgtgaatttacgataaatttttcgctcagactctataaaattcttggc 39368625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 17839583 - 17839637
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    ||||||||||||||| |||||||||||||| ||| |||||| |||||||||||||    
T  17839583 tcacatgtgaatttgcgataaatttttcgcccaggctctatgtaattcctggctc 17839637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5637629 - 5637575
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    ||||||||||||||| |||||||||||||| ||  |||||| |||||||||||||    
T  5637629 tcacatgtgaatttgcgataaatttttcgcccaagctctatgtaattcctggctc 5637575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 10014371 - 10014318
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggct 54  Q
    |||||| |||||||| |||||||||||||| ||| |||||||||||| ||||||    
T  10014371 tcacatatgaatttgcgataaatttttcgcccaggctctatataatttctggct 10014318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 21148958 - 21148900
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctctgcc 59  Q
    |||||| |||||||| |||||||||||||| ||| |||||| |||||||||||||||||    
T  21148958 tcacatatgaatttgcgataaatttttcgcccaggctctatgtaattcctggctctgcc 21148900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 2753840 - 2753894
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    |||||||||||||||  |||| |||||||| ||||||||||||||||||| ||||    
T  2753840 tcacatgtgaatttgcaataagtttttcgcccagactctatataattcctcgctc 2753894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 3051119 - 3051165
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataatt 47  Q
    ||||||||||||||| |||||||||||||| || |||||||||||||    
T  3051119 tcacatgtgaatttgcgataaatttttcgcccaaactctatataatt 3051165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 26218359 - 26218305
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    |||||||||||||||  ||||||||||||| ||| |||||||||||| |||||||    
T  26218359 tcacatgtgaatttgcaataaatttttcgctcaggctctatataatttctggctc 26218305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13647625 - 13647679
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    |||||||||||||||  ||||||||||||  ||| |||||| |||||||||||||    
T  13647625 tcacatgtgaatttgcaataaatttttcgtccaggctctatgtaattcctggctc 13647679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 34385066 - 34385012
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    ||||||||||||||| |||||||||||||| ||| |||||  ||||| |||||||    
T  34385066 tcacatgtgaatttgcgataaatttttcgcccaggctctacgtaatttctggctc 34385012  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 2836105 - 2836057
Alignment:
Q  13 ttgtgataaatttttcgcacagactctatataattcctggctctgccgc 61  Q
    |||| |||||||||| || ||||||||||| ||||||||| ||||||||    
T  2836105 ttgtaataaattttttgctcagactctataaaattcctggatctgccgc 2836057  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 2985857 - 2985911
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    ||||||||||||||  |||||||||||||| ||| ||||||||||||||||||||    
T  2985857 tcacatgtgaatttacgataaatttttcgcccaggctctatataattcctggctc 2985911  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 4306735 - 4306681
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    ||||||||||||||| |||||||||||||| ||| |||||| |||||||||||||    
T  4306735 tcacatgtgaatttgcgataaatttttcgcccaggctctatgtaattcctggctc 4306681  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 14317140 - 14317194
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    ||||||||||||||| |||||||||||||  ||| ||||||||||||||||||||    
T  14317140 tcacatgtgaatttgcgataaatttttcgtccaggctctatataattcctggctc 14317194  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 15497509 - 15497455
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    ||||||||||||||| |||||||||||||| ||| |||||| |||||||||||||    
T  15497509 tcacatgtgaatttgcgataaatttttcgcccaggctctatgtaattcctggctc 15497455  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 6891500 - 6891554
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    ||||||||||||||| |||||||||||||| ||| |||||| |||||||||||||    
T  6891500 tcacatgtgaatttgcgataaatttttcgcccaggctctatgtaattcctggctc 6891554  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19269224 - 19269170
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    ||||||||||||||| |||||||||||||| ||| |||||| |||||||||||||    
T  19269224 tcacatgtgaatttgcgataaatttttcgcccaggctctatgtaattcctggctc 19269170  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 48757396 - 48757342
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    ||||||||||||||| |||||||||||||| ||| |||||| |||||||||||||    
T  48757396 tcacatgtgaatttgcgataaatttttcgcccaggctctatgtaattcctggctc 48757342  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 21434429 - 21434483
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    ||||||||||| ||| |||||||||||||| |||||||||| |||||||| ||||    
T  21434429 tcacatgtgaacttgcgataaatttttcgcccagactctatgtaattcctagctc 21434483  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 51817917 - 51817863
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    ||||||||||||||| ||| |||||||||  ||| |||||| |||||||||||||    
T  51817917 tcacatgtgaatttgcgattaatttttcgtccaggctctatgtaattcctggctc 51817863  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 49908278 - 49908227
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctgg 52  Q
    ||||||||||||||| |||||||||||||| ||| |||||| ||||||||||    
T  49908278 tcacatgtgaatttgcgataaatttttcgcccaggctctatgtaattcctgg 49908227  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5516995 - 5516941
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    ||||||||||||||| |||||||||||||| ||| |||||| || ||||||||||    
T  5516995 tcacatgtgaatttgcgataaatttttcgcccaggctctatgtagttcctggctc 5516941  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6211592 - 6211542
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctg 51  Q
    ||||||||||||||| |||||||||||||| ||| |||||| |||||||||    
T  6211592 tcacatgtgaatttgcgataaatttttcgctcaggctctatgtaattcctg 6211542  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 17555450 - 17555504
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    ||||||||||||||| |||||||||||||| ||| |||||| ||||| |||||||    
T  17555450 tcacatgtgaatttgcgataaatttttcgctcaggctctatgtaatttctggctc 17555504  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 37236179 - 37236125
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    ||||||||||||||| |||||||||||||| ||| |||||| ||||| |||||||    
T  37236179 tcacatgtgaatttgcgataaatttttcgcccaggctctatgtaatttctggctc 37236125  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 42843966 - 42844020
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    ||||||||||||| | |||||||||||||| ||| ||||||| ||||||||||||    
T  42843966 tcacatgtgaattggcgataaatttttcgcccaggctctatagaattcctggctc 42844020  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 52373931 - 52373974
Alignment:
Q  12 tttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    |||| ||||||||||| |||||||||||||| ||||||||||||    
T  52373931 tttgcgataaattttttgcacagactctataaaattcctggctc 52373974  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1818815 - 1818869
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    |||||||||||||||||||||||||||||| |   ||||||| | ||||||||||    
T  1818815 tcacatgtgaatttgtgataaatttttcgcccgtgctctataaatttcctggctc 1818869  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 12679773 - 12679719
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctc 55  Q
    ||||||||||||||| |||||||||||| | ||  |||||| |||||||||||||    
T  12679773 tcacatgtgaatttgcgataaatttttcacccaagctctatgtaattcctggctc 12679719  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 25182796 - 25182739
Alignment:
Q  1 tcacatgtgaatttgtgataaatttttcgcacagactctatataattcctggctctgc 58  Q
    ||||||||||||||| ||||| ||||| ||  || ||||||| |||||||||||||||    
T  25182796 tcacatgtgaatttgcgataatttttttgcctaggctctataaaattcctggctctgc 25182739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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